PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07656g00004.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 410aa    MW: 47874.6 Da    PI: 5.5372
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07656g00004.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.51.1e-16176222148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               +g WT eEd ll+++v+++G + W+ Ia+++  gR +kqc++rw+++l
  Niben101Scf07656g00004.1 176 KGQWTIEEDRLLIHLVEKFGVRKWSQIAQMLK-GRIGKQCRERWHNHL 222
                               799****************************9.*************97 PP
2Myb_DNA-binding51.72e-16230270345
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                                WT+eEd +l++a+++ G++ W+ Ia+++  gR+++++k++w+
  Niben101Scf07656g00004.1 230 LWTEEEDRILIEAHAEVGNK-WAEIAKRLA-GRSENSIKNHWN 270
                               6*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.888169226IPR017930Myb domain
SMARTSM007171.2E-15175224IPR001005SANT/Myb domain
SuperFamilySSF466897.7E-31175269IPR009057Homeodomain-like
PfamPF002493.2E-16176222IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-26177228IPR009057Homeodomain-like
CDDcd001671.55E-13179222No hitNo description
SMARTSM007179.8E-17227275IPR001005SANT/Myb domain
PROSITE profilePS5129421.548227277IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-21229276IPR009057Homeodomain-like
PfamPF002493.3E-15230270IPR001005SANT/Myb domain
CDDcd001672.60E-12231273No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010183Biological Processpollen tube guidance
GO:0045697Biological Processregulation of synergid differentiation
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 410 aa     Download sequence    Send to blast
MELDRQDFSF HPIFVPNNNS LKPELDDDFC INSKDYYLQD FQHLDLNYTF NNTGNFMIDT  60
NGFDLFDPFS NEYNFSSLGD FNFSYELKPF DQENGESGNT IKENTMDESH CEDVKPLNFV  120
VPDESSSCVT DGSNCKSEIG ELRKNRKAKR NDQSSLLSSS MKNLGRERNK KCKSAKGQWT  180
IEEDRLLIHL VEKFGVRKWS QIAQMLKGRI GKQCRERWHN HLRPDIKKDL WTEEEDRILI  240
EAHAEVGNKW AEIAKRLAGR SENSIKNHWN ATKRRQFSRR KCRTKWPKPS SLLQNYIKSL  300
NLEKGNSKIN YSQTSNNATN STAKVETIEF CQENIDQVHE YCDFSEVPEF FEENRMNSFM  360
EDIHVGTPPS IMEKCMGLEI IPYELPTFMQ GDQVNNKEID LMEMISRVNP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C1e-431762764104C-Myb DNA-Binding Domain
1msf_C1e-431762764104C-Myb DNA-Binding Domain
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00442DAPTransfer from AT4G18770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019248458.10.0PREDICTED: transcription factor MYB98-like
TrEMBLA0A1J6IMW20.0A0A1J6IMW2_NICAT; Transcription factor myb98
STRINGXP_009603629.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA31502349
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.17e-78myb domain protein 98