PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07640g01014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ARF | ||||||||
Protein Properties | Length: 846aa MW: 94693.5 Da PI: 6.4036 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 72.4 | 5.5e-23 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 f+k+lt sd++++g +++p++ ae+ ++ +++ ++l+ +d++ +W++++i+r++++r++lt+GW+ Fv+a++L +gD+ Niben101Scf07640g01014.1 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfSQTPPC-QELIARDLHDIEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDS 210 99*****************************7555555.59******************************************** PP EEEEE-SSSEE..EEEEE-S CS B3 80 vvFkldgrsefelvvkvfrk 99 v+F ++++ +l+++++r+ Niben101Scf07640g01014.1 211 VLFI--WNEKNQLLLGIRRA 228 ****..8899999****997 PP | |||||||
2 | Auxin_resp | 116.2 | 2.9e-38 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+v++nPras+seFv++++k+ ka++ ++vsvGmRf+m fete+ss rr++Gt++gv dldpvrW nS+Wrs+k Niben101Scf07640g01014.1 253 AAHAAATNSCFTVFFNPRASPSEFVIPLSKYIKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGVGDLDPVRWANSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 7.06E-49 | 111 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-41 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.40E-21 | 126 | 227 | No hit | No description |
SMART | SM01019 | 2.4E-23 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.1E-21 | 127 | 228 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 11.998 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.3E-33 | 253 | 336 | IPR010525 | Auxin response factor |
SuperFamily | SSF54277 | 5.04E-7 | 719 | 794 | No hit | No description |
PROSITE profile | PS51745 | 24.573 | 720 | 804 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009725 | Biological Process | response to hormone | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 846 aa Download sequence Send to blast |
MKLSTSGLSQ QPHEGEKKCL NSELWHACAG PLVCLPTVGS RVVYFPQGHS EQVAATTNKE 60 VDAHIPNYPN LPPQLICQLH NVTMHADVET DEVYAQMTLQ PLTLQEQKDT YLPVELGIPS 120 RQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ TPPCQELIAR DLHDIEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRATR PQTVMPSSVL 240 SSDSMHIGLL AAAAHAAATN SCFTVFFNPR ASPSEFVIPL SKYIKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGVG DLDPVRWANS HWRSVKVGWD ESTAGERQPR VSLWEIEPLT 360 TFPMYPSLFP LRLKRPWYPG TSYFQENNSD AINGMTWLRG EGCDQGPHLM NLQSFGMLPW 420 MQQRVDPTIL RNDLNQQYQA MLATGLQNFG SGDMLKQQLM QFQQPVQYLQ HASSHNPLLQ 480 QQQQQAMQQQ QQQQQAIHQH ILPAQTLMDN VQRQPQQQVG NQMNDQAHQP SYQEAYQISR 540 SQLQQKQPSN IPSQSFSKPD FADPNSKFAA SIAPSVIPTR LGSLCSEGSS SFLNFNSTGQ 600 QSVIMEQPPQ KSWMSKYGHS ELNAGSNSSL VPAYGKDTST SLETCSLDAQ NQNLFGANVD 660 SSGLLLPTTV SNVSTASIDA DMSAMPLGTS GFQNSLYGYV QDSSDLLHNA GQVDPLNATR 720 TFVKVYKSGS VGRSLDITRF NSYHELRQEL GQMFGIEGFL EDPQRSGWQL VFVDRENDVL 780 LLGDDPWEAF VNNVWYIKIL SPEDVQKLGK EEVESLNRGS LERMNSNSAD GRDFMSGLPS 840 IGSLEY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-159 | 16 | 357 | 47 | 388 | Auxin response factor 5 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional activator. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Regulates both stamen and gynoecium maturation. Promotes jasmonic acid production. Partially redundant with ARF6. Involved in fruit initiation. Acts as an inhibitor to stop further carpel development in the absence of fertilization and the generation of signals required to initiate fruit and seed development. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16107481, ECO:0000269|PubMed:16829592}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR167. {ECO:0000269|PubMed:17021043}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019260526.1 | 0.0 | PREDICTED: auxin response factor 8-like | ||||
Swissprot | Q9FGV1 | 0.0 | ARFH_ARATH; Auxin response factor 8 | ||||
TrEMBL | A0A314LC94 | 0.0 | A0A314LC94_NICAT; Auxin response factor | ||||
STRING | XP_009789648.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3857 | 23 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G37020.1 | 0.0 | auxin response factor 8 |