PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07611g02006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family TCP
Protein Properties Length: 315aa    MW: 36810.3 Da    PI: 8.8098
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07611g02006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP123.72e-38972473131
                       TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt..............ssssasec 73 
                                kkdrhski T +g+RdRR+Rls+++a+ fF Lqd+L f k+skt+eWLl+++k  ikel ++              s ss sec
  Niben101Scf07611g02006.1  97 SKKDRHSKINTTKGPRDRRIRLSIDIARNFFNLQDMLRFEKASKTLEWLLKKSKSDIKELSKSrisklscstvmdanSESSTSEC 181
                               69*************************************************************9999999999987655555677 PP

                       TCP  74 ...eaesssssasnsssg........kaaksaakskksqksaasalnlakesrakarararertrekmr 131
                                  ++ ++s s+++   +        k+++++++++ks ++ a ++ +akesr++ar+rarert+ k++
  Niben101Scf07611g02006.1 182 evvSEIDESPSNHK---AntkgnscnKERRKKKEKEKSVRRVAFFHPFAKESRKQARERARERTKLKKN 247
                               44433333333332...234567785666677789999999999********************98865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.4E-4197246IPR005333Transcription factor, TCP
PROSITE profilePS5136931.68698156IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.211228245IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MYNSRNYAYN YNPIFSSNLF NIPSPCMQYE HEFFFQYYHD QLQQNLDDTL AEIRAETAII  60
NTTDSNKDNA IISRNELEQE EGCENKKGKV SSNKRVSKKD RHSKINTTKG PRDRRIRLSI  120
DIARNFFNLQ DMLRFEKASK TLEWLLKKSK SDIKELSKSR ISKLSCSTVM DANSESSTSE  180
CEVVSEIDES PSNHKANTKG NSCNKERRKK KEKEKSVRRV AFFHPFAKES RKQARERARE  240
RTKLKKNFCE ESEMLAEVEE LTPQIEKQLL LGTKENLVND CNLVVSGNWS PFSIFNYQQN  300
AEIFHEHQTT DFPFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1206211RRKKKE
2207212RKKKEK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009765929.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_009765933.10.0PREDICTED: transcription factor CYCLOIDEA-like
RefseqXP_009765939.10.0PREDICTED: transcription factor CYCLOIDEA-like
TrEMBLA0A1U7VU610.0A0A1U7VU61_NICSY; transcription factor CYCLOIDEA-like
STRINGXP_009765929.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA24822256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67260.24e-25TCP family protein