PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07611g01002.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 268aa    MW: 29608 Da    PI: 8.1305
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07611g01002.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.85.7e-09956347
                              SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrwqky 47
                               W+ eE++ + +a++ +  +    +W +Ia++++  +t +++k ++q +
  Niben101Scf07611g01002.1  9 MWSREEEKAFENAIAIHWIEdsklQWQKIASMVP-CKTIEELKQHYQLL 56
                              5*****************99**************.99*********965 PP

2Myb_DNA-binding38.52.7e-12132176347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ l++ +  ++G+g+W++I+r     Rt+ q+ s+ qky
  Niben101Scf07611g01002.1 132 PWTEEEHRLFLLGLDKFGKGDWRSISRNYVISRTPTQVASHAQKY 176
                               7*****************************89************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.764560IPR017884SANT domain
SMARTSM007170.016659IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-4956IPR009057Homeodomain-like
CDDcd001676.17E-81057No hitNo description
SuperFamilySSF466898.61E-91064IPR009057Homeodomain-like
PfamPF002499.7E-61055IPR001005SANT/Myb domain
PROSITE profilePS5129416.887125181IPR017930Myb domain
SuperFamilySSF466897.9E-17127182IPR009057Homeodomain-like
SMARTSM007174.7E-10129179IPR001005SANT/Myb domain
TIGRFAMsTIGR015572.7E-17129179IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.7E-10130175IPR009057Homeodomain-like
CDDcd001679.78E-10132177No hitNo description
PfamPF002498.3E-11132176IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MSASTISLMW SREEEKAFEN AIAIHWIEDS KLQWQKIASM VPCKTIEELK QHYQLLVDDV  60
TDIEAGNVPI PIYTGEETSS STKDTSHCYS GISTGRSNCS YIKGFSGSVH DQIGQGGKAS  120
SKSEQERRKG IPWTEEEHRL FLLGLDKFGK GDWRSISRNY VISRTPTQVA SHAQKYFIRL  180
NSMNRDRRRS SIHDITSVNN GEVVTNQTPI TGQQTNSSPS NAVGPNVGQR NQLNMHGLGI  240
YGAPMGHPVA APPGHHVSAV GTPFLRSD
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019265953.10.0PREDICTED: transcription factor DIVARICATA-like
SwissprotQ9FNN66e-78SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A314L2D00.0A0A314L2D0_NICAT; Transcription factor myb1r1
STRINGXP_009762003.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58012136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49010.14e-75MYB family protein
Publications ? help Back to Top
  1. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  2. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]