PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07579g01012.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 267aa MW: 30211 Da PI: 6.7305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65 | 1.5e-20 | 62 | 111 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa a+++a++k++g Niben101Scf07579g01012.1 62 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAIAYDEAALKFKG 111 7********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.2E-33 | 61 | 120 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-22 | 62 | 120 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.93E-22 | 62 | 120 | No hit | No description |
Pfam | PF00847 | 8.7E-14 | 62 | 111 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.908 | 62 | 119 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.2E-38 | 62 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 63 | 74 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-11 | 85 | 101 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 267 aa Download sequence Send to blast |
MSAMVSVLSQ VIGNTNNNTN ISSVNSSVHA ISPLTLPQST GANLQNQSQS TQEQGNQQRK 60 RHYRGVRQRP WGKWAAEIRD PKKAARVWLG TFDTAEAAAI AYDEAALKFK GNKAKLNFPE 120 RVQGKTEFSF LTNTTQQEFG IVGQQLPATS SMNNNLPYFQ PNYLSQEHFP NVHHYAQLLR 180 DGNNFEMNFR VSPNFYRPIS EGFVSESLPN SSLELQQGTS HEQEQGDSYN QQQEEDFLRF 240 PFHYGNSNSS TGPNTGESNW EDFEHRK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-26 | 61 | 122 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019264409.1 | 1e-155 | PREDICTED: ethylene-responsive transcription factor ERF114-like | ||||
TrEMBL | A0A314L4G1 | 1e-154 | A0A314L4G1_NICAT; Ethylene-responsive transcription factor erf115 | ||||
STRING | XP_009804195.1 | 1e-154 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 3e-34 | related to AP2 6l |