PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07508g07007.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

Dof

Protein Properties

Length: 273aa MW: 30444.9 Da PI: 5.2771

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07508g07007.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.1	2.1e-39	152	211	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++k l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Niben101Scf07508g07007.1 152 PDKFLPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNS 211 78899****************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-30	149	209	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	2.6E-32	154	210	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.919	156	210	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	158	194	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 273 aa Download sequence Send to blast
MRELKDPEIK LFGKKIALPE NEKVLRLIVS GDVNSGNASY GVTISETIIG SDCDRYLEDE 60 KESSEEKDEG SDEEIQEAEK NHISGDLSET KSEEKDQNQM IEKSEDPKLS LESDNNPKTP 120 NIDEDSPALK TSKTKNDPND ASNSQQKPLK KPDKFLPCPR CNSMDTKFCY YNNYNVNQPR 180 HFCKSCQRYW TAGGTMRNVP VGAGRRKNKN SAPHCRHITM PEALQAERID PPNGFHHPTF 240 KPNGSVLSFG PDSPLCESMA SLMMSSTTAV LSA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019258034.1	1e-158	PREDICTED: cyclic dof factor 3
TrEMBL	A0A314LGI7	1e-156	A0A314LGI7_NICAT; Cyclic dof factor 3
STRING	XP_009587736.1	1e-152	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	7e-53	cycling DOF factor 2