PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07466g05009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 562aa    MW: 61256.2 Da    PI: 7.9062
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07466g05009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.71.5e-11202226226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               +++ C ++++t tCk+Gd+CkF H+
  Niben101Scf07466g05009.1 202 GEKDCAHYMQTRTCKFGDSCKFDHP 226
                               7889********************8 PP
2zf-CCCH36.86.7e-12251277127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C++f++t  Ck+G+rCkF+H++
  Niben101Scf07466g05009.1 251 PGEPDCPYFMKTQKCKFGNRCKFNHPK 277
                               5789*********************96 PP
3zf-CCCH36.48.5e-12300324327
                               S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                               ++ C f+++tG Ck+G++CkF+H++
  Niben101Scf07466g05009.1 300 EPSCAFYMKTGACKFGATCKFHHPR 324
                               577********************96 PP
4zf-CCCH36.58.2e-12374400127
                               --S---SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                               ++++ C+f+++tG CkyG++C+++H++
  Niben101Scf07466g05009.1 374 PGEADCPFYLKTGSCKYGGTCRYNHPE 400
                               57899********************96 PP
5zf-CCCH41.52.2e-13454477326
                               S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                               + +C+f+++tG+Ck+G+rCkF+H+
  Niben101Scf07466g05009.1 454 QIECDFYMKTGECKFGERCKFHHP 477
                               568********************9 PP
6zf-CCCH37.34.6e-12511532627
                               -SGGGGTS--TTTTT-SS-SSS CS
                   zf-CCCH   6 CrffartGtCkyGdrCkFaHgp 27 
                               C+++++tG CkyG++CkF H+p
  Niben101Scf07466g05009.1 511 CPYYMKTGMCKYGATCKFDHPP 532
                               ********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.742200228IPR000571Zinc finger, CCCH-type
SMARTSM003560.0013200227IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.44E-5201227IPR000571Zinc finger, CCCH-type
PfamPF006423.4E-9202226IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4206225IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.915250278IPR000571Zinc finger, CCCH-type
SMARTSM003568.6E-6250277IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-9252277IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.11E-5255279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-4256276IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.295297325IPR000571Zinc finger, CCCH-type
SMARTSM003563.0E-5297324IPR000571Zinc finger, CCCH-type
PfamPF006422.3E-9300324IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.33E-6301325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.5E-4303324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.112373401IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-6373400IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-9375400IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5377401IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-4379400IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.507451479IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-7451478IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-6454480IPR000571Zinc finger, CCCH-type
PfamPF006429.3E-11455477IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-5457477IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.319505533IPR000571Zinc finger, CCCH-type
SMARTSM003562.8E-6505532IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.37E-6509532IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.2E-5511530IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-8511532IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 562 aa     Download sequence    Send to blast
ICLNFSLFKQ TKLGKREVTS RTFPSLCGGL FTVGCPVESV LGEMANQLYG YNPSSNEGIA  60
AGSNLSRTTT RSMDDYLSTD NNKTLLGSSS YFGSSGYSFS SPTMLFNHSD SYNPAASKIP  120
GLADYQSSWT APPGVDVAQP PAADSYFSSL KRSSSDALYH QTLLGARNTI GQAEAWFSAN  180
PLAKRPRFES ASNLSIYPQR PGEKDCAHYM QTRTCKFGDS CKFDHPIWVP EGGIPDWKEV  240
PVIAESLPER PGEPDCPYFM KTQKCKFGNR CKFNHPKDNT AHLGSVQNSD VSVLPERPSE  300
PSCAFYMKTG ACKFGATCKF HHPRDIQLPS PKQESGSAEN PGSANNEMTE DVNLIKPLSV  360
PALLHNSKGL PIRPGEADCP FYLKTGSCKY GGTCRYNHPE RTAAIGPALV ASPATHLNIG  420
MVNPAASLLQ NFDPRLTHTM LGLLPPVYPQ RPGQIECDFY MKTGECKFGE RCKFHHPLDR  480
SAPVVSAKDV QQPNVKLTLA GLPRREGAVH CPYYMKTGMC KYGATCKFDH PPPGEVLGMA  540
TSQGASLSVE GEDTVDVKEQ KQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009782011.10.0PREDICTED: zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A1U7WXI10.0A0A1U7WXI1_NICSY; zinc finger CCCH domain-containing protein 37 isoform X1
STRINGXP_009782011.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA106402125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)