PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07442g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 331aa    MW: 37414.2 Da    PI: 9.1669
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07442g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP228.15.1e-092974554
                       AP2  5 GVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54
                              GVr+ k +gr+ A I d       r k+ +l +f+t eeA +a+   + ++e
  Niben101Scf07442g01009.1 29 GVRRQK-NGRYGAVITDrI-----RhKKLWLDTFDTIEEASQAYLSKKSEIE 74
                              9**888.8*********32.....35******************98877766 PP
2AP241.53.4e-13131178252
                       AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52 
                               ++ GV+ +k + ++ +eIr p++n   kr++lg+fgtaeeA +a+   +++
  Niben101Scf07442g01009.1 131 HIIGVHKRKDSRKYTSEIRNPTSN---KRIWLGTFGTAEEASQAYQSKKLE 178
                               789*****************9764...*****************9776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103210.9952686IPR001471AP2/ERF domain
SMARTSM003800.0122672IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-82772IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.5E-92967IPR001471AP2/ERF domain
CDDcd000185.06E-112966No hitNo description
PfamPF008474.3E-52975IPR001471AP2/ERF domain
PfamPF008471.5E-6130175IPR001471AP2/ERF domain
PROSITE profilePS5103213.617131194IPR001471AP2/ERF domain
SMARTSM003803.0E-5131186IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-11132180IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.2E-13134180IPR001471AP2/ERF domain
CDDcd000183.58E-11134172No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MANVSVTESS DECNTTPSCN PKAKRILLGV RRQKNGRYGA VITDRIRHKK LWLDTFDTIE  60
EASQAYLSKK SEIEKLSQQG NKENKPKNCD QIQQLESPVV ASLSVANDQT LDTVSVCRRN  120
KRIDFHKKTT HIIGVHKRKD SRKYTSEIRN PTSNKRIWLG TFGTAEEASQ AYQSKKLEFQ  180
KLVKEKQQQC TNKQTHSKQE AGKEKLVNVK QGHENLVGQK LMSQSQIHLK GGTDQRIDSH  240
EIGKAEEAFH ACQSKIFDFH SSKKVELQSN MPTDYSAGEK QEGQEDEDLW MGGMGPTSRE  300
VKFSLKLGLP IIDNYGSLLG EFSTLDDLNI C
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016566296.11e-144PREDICTED: uncharacterized protein LOC107864446
TrEMBLA0A1J6JBA20.0A0A1J6JBA2_NICAT; Uncharacterized protein
STRINGPGSC0003DMT4000317511e-143(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA43411240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28370.12e-11ERF domain protein 11