PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07438g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 289aa    MW: 32778.9 Da    PI: 7.8456
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07438g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.61.1e-161461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd  lv +++++G+g+W++++   g+ R+ k+c++rw +yl
  Niben101Scf07438g03001.1 14 KGPWTPEEDIVLVSYIQEHGPGNWRSVPTNTGLMRCSKSCRLRWTNYL 61
                              79********************************************97 PP
2Myb_DNA-binding46.67.8e-1567112148
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                               rg++T+ E+  +v++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Niben101Scf07438g03001.1  67 RGNFTPHEEGMIVHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 112
                               89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129424.939965IPR017930Myb domain
SuperFamilySSF466892.1E-3011108IPR009057Homeodomain-like
SMARTSM007171.6E-121363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
CDDcd001671.42E-101661No hitNo description
Gene3DG3DSA:1.10.10.601.3E-2465117IPR009057Homeodomain-like
SMARTSM007175.9E-1366114IPR001005SANT/Myb domain
PROSITE profilePS5129418.58566116IPR017930Myb domain
PfamPF002496.1E-1367112IPR001005SANT/Myb domain
CDDcd001676.25E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009416Biological Processresponse to light stimulus
GO:0009737Biological Processresponse to abscisic acid
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0010118Biological Processstomatal movement
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MGRPPCCDKI GIKKGPWTPE EDIVLVSYIQ EHGPGNWRSV PTNTGLMRCS KSCRLRWTNY  60
LRPGIKRGNF TPHEEGMIVH LQALLGNKWA AIASYLPQRT DNDIKNYWNT HLKKKLKKFQ  120
TGLDSHLTSP PADSNTCDHF SWHFMSDNNK QGSTFSLQQN HNSPNSSSSL YASCTENISR  180
LLEGWMRSSP HPSTKVDEMI LHDNQHNQDD QDLFKGRGTS LVRDEGISNN IKTIPREYKS  240
VISACESSGI AEKTMNTNTP PPFTYLEKWL LEENAGQVEE LMGLPMIFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A3e-24141164105MYB PROTO-ONCOGENE PROTEIN
1h8a_C3e-241211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269|PubMed:22018045}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00132DAPTransfer from AT1G08810Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269|PubMed:22018045}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019227638.10.0PREDICTED: transcription factor MYB30-like
SwissprotB3VTV71e-110MYB60_VITVI; Transcription factor MYB60
TrEMBLA0A314KPL00.0A0A314KPL0_NICAT; Transcription factor myb30
STRINGXP_009772442.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08810.12e-98myb domain protein 60
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]