PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07402g05014.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB | ||||||||
Protein Properties | Length: 257aa MW: 28982.7 Da PI: 4.985 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.5 | 2.6e-07 | 14 | 45 | 1 | 32 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg 32 +g+W++eEd++l++ + G +W++ +r g Niben101Scf07402g05014.1 14 KGPWSAEEDKKLINFILINGQCCWRSLPRLAG 45 79***************************998 PP | |||||||
2 | Myb_DNA-binding | 28.5 | 3.5e-09 | 62 | 84 | 24 | 47 |
HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47 W++Ia+ ++ gRt++++k++w+++ Niben101Scf07402g05014.1 62 WSKIASNLP-GRTDNEIKNHWNTH 84 *********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 6.8E-20 | 6 | 93 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.437 | 9 | 89 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-13 | 13 | 87 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.6E-10 | 14 | 86 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.83E-10 | 16 | 85 | No hit | No description |
Pfam | PF00249 | 7.8E-7 | 62 | 84 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MGRKPSCDKD GVKKGPWSAE EDKKLINFIL INGQCCWRSL PRLAGLSLIL SNSVILVDII 60 VWSKIASNLP GRTDNEIKNH WNTHIKKKLK KMGIDPVTHQ PITVNQPNIE QPTKNQPIIQ 120 QEKQTTMPIS PSHVVPEIMD ILDHNKELVE TPILSTITDI KLDDDNNNNS NINNNKNTGT 180 SFCTDEVPVI KPHEILFHSE STTSTSSSSS PTSIILEDTQ FDFNWGDDFS RTLDYLLNDD 240 IDMNNVISQD WSKVLEV |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009620990.1 | 1e-139 | PREDICTED: protein ODORANT1-like | ||||
TrEMBL | A0A1S4DQ14 | 1e-137 | A0A1S4DQ14_TOBAC; protein ODORANT1-like | ||||
STRING | XP_009620990.1 | 1e-139 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16600.1 | 2e-46 | myb domain protein 43 |