PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07402g05014.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 257aa    MW: 28982.7 Da    PI: 4.985
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07402g05014.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071445132
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg 32
                              +g+W++eEd++l++ +   G  +W++ +r  g
  Niben101Scf07402g05014.1 14 KGPWSAEEDKKLINFILINGQCCWRSLPRLAG 45
                              79***************************998 PP

2Myb_DNA-binding28.53.5e-0962842447
                              HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding 24 WktIartmgkgRtlkqcksrwqky 47
                              W++Ia+ ++ gRt++++k++w+++
  Niben101Scf07402g05014.1 62 WSKIASNLP-GRTDNEIKNHWNTH 84
                              *********.************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.8E-20693IPR009057Homeodomain-like
PROSITE profilePS5129414.437989IPR017930Myb domain
SMARTSM007175.7E-131387IPR001005SANT/Myb domain
SuperFamilySSF466892.6E-101486IPR009057Homeodomain-like
CDDcd001679.83E-101685No hitNo description
PfamPF002497.8E-76284IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MGRKPSCDKD GVKKGPWSAE EDKKLINFIL INGQCCWRSL PRLAGLSLIL SNSVILVDII  60
VWSKIASNLP GRTDNEIKNH WNTHIKKKLK KMGIDPVTHQ PITVNQPNIE QPTKNQPIIQ  120
QEKQTTMPIS PSHVVPEIMD ILDHNKELVE TPILSTITDI KLDDDNNNNS NINNNKNTGT  180
SFCTDEVPVI KPHEILFHSE STTSTSSSSS PTSIILEDTQ FDFNWGDDFS RTLDYLLNDD  240
IDMNNVISQD WSKVLEV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009620990.11e-139PREDICTED: protein ODORANT1-like
TrEMBLA0A1S4DQ141e-137A0A1S4DQ14_TOBAC; protein ODORANT1-like
STRINGXP_009620990.11e-139(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.12e-46myb domain protein 43