PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf07393g00006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 219aa MW: 25629.7 Da PI: 8.8307 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.5 | 3e-20 | 66 | 118 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +LAk+lgL+ rq+ vWFqNrRa++k Niben101Scf07393g00006.1 66 KKRLTSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWK 118 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 116.1 | 2e-37 | 65 | 155 | 2 | 92 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekevee 86 kk+rl+++q+++LE+sF+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+k+kqlE+ y++Lk+ y +++e+++L++e ++ Niben101Scf07393g00006.1 65 KKKRLTSDQLESLENSFQEEIKLDPDRKMKLAKELGLQPRQIAVWFQNRRARWKSKQLERLYDSLKQDYGLVSREKQKLQNEEQA 149 9************************************************************************************ PP HD-ZIP_I/II 87 Lreelk 92 +++++ Niben101Scf07393g00006.1 150 TKKQVN 155 999987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.71E-19 | 54 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.362 | 60 | 120 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.2E-17 | 62 | 124 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.68E-16 | 65 | 121 | No hit | No description |
Pfam | PF00046 | 1.3E-17 | 65 | 118 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-22 | 67 | 127 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 6.3E-6 | 91 | 100 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 95 | 118 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 6.3E-6 | 100 | 116 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 219 aa Download sequence Send to blast |
MDWNGNLRPF VSRPAPPDNS FNFLYSYNYD QYPGMEMKYA MQTQNGVLPT MDKLNNNFAM 60 NQLDKKKRLT SDQLESLENS FQEEIKLDPD RKMKLAKELG LQPRQIAVWF QNRRARWKSK 120 QLERLYDSLK QDYGLVSREK QKLQNEEQAT KKQVNSTVYT EISGEETVES TSMPISNKTR 180 GITTSNHQNN NNNNMAECSY VFNVNNVEGF NPVMPPYWV |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 112 | 120 | RRARWKSKQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009758049.1 | 1e-149 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Refseq | XP_016490887.1 | 1e-149 | PREDICTED: putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 6e-50 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1S4BPS4 | 1e-148 | A0A1S4BPS4_TOBAC; putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A1U7V734 | 1e-148 | A0A1U7V734_NICSY; putative homeobox-leucine zipper protein ATHB-51 | ||||
STRING | XP_009758049.1 | 1e-149 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3869 | 22 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 6e-52 | homeobox 51 |
Publications ? help Back to Top | |||
---|---|---|---|
|