PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07370g01009.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family E2F/DP
Protein Properties Length: 380aa    MW: 41782.7 Da    PI: 8.8247
Description E2F/DP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07370g01009.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1E2F_TDP871.4e-27123205271
                   E2F_TDP   2 keksLrlltqkflklleksee.givtlnevakeLvse................dvknkrRRiYDilNVLealnliekkekneirw 69 
                               ++++Lr++++k   ++ek+e+ g++t+neva+eLv+e                d+kn+rRR+YD+lNVL+a+++i+k +k+ei+w
  Niben101Scf07370g01009.1 123 SGRGLRQFSMK---VCEKVESkGRTTYNEVADELVAEfsdpanghessdqrqyDEKNIRRRVYDALNVLMAMDIISK-DKKEIQW 203
                               689********...*****999*******************************************************.******* PP

                   E2F_TDP  70 kg 71 
                               kg
  Niben101Scf07370g01009.1 204 KG 205
                               98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.105.5E-1081111IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.103.0E-46118210IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM013721.1E-34122205IPR003316E2F/DP family, winged-helix DNA-binding domain
PfamPF023197.3E-25124205IPR003316E2F/DP family, winged-helix DNA-binding domain
SuperFamilySSF467852.45E-21125206IPR011991Winged helix-turn-helix DNA-binding domain
CDDcd144586.80E-42211313IPR014889Transcription factor DP, C-terminal
SMARTSM011388.3E-66212378IPR014889Transcription factor DP, C-terminal
SuperFamilySSF1440742.88E-40212327No hitNo description
PfamPF087811.2E-40213350IPR014889Transcription factor DP, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005667Cellular Componenttranscription factor complex
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MGNNLEEGGK NPSEVSRRSW GPTTTVSGQS VSTSGSVGSP SVVATPGSDN TFVRLNNLDI  60
HADDAVSQGA AAKKKRGQRA TGGDKSGRGL RQFSMKVCEK VESKGRTTYN EKRGQRATGG  120
DKSGRGLRQF SMKVCEKVES KGRTTYNEVA DELVAEFSDP ANGHESSDQR QYDEKNIRRR  180
VYDALNVLMA MDIISKDKKE IQWKGLPRTD ANDIEELKAE RLSLRNRIEK KAAYLEELEE  240
QYVGLQNLIK CNKQLYGSGD APSGGVALPF ILVQTRPHAT VEVEISEDMQ LVHFDFNSTP  300
FELHDDNYVL KAMKFCGRQK TDVVAQNISA DGAEGSSSSL ANMFQHQISH TPVSNTPGRR  360
STPTSPPLPG ILKARIKHEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1cf7_B2e-39116211194PROTEIN (TRANSCRIPTION FACTOR DP-2)
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of the G1/S transition. Increases the DNA binding activity of E2F proteins after heterodimerization. The complex DPB/E2FC restricts cell division and lateral root initiation and may function as a negative regulator of E2F-regulated genes. The interaction with SKP2A is controlled by auxin. {ECO:0000269|PubMed:11891240, ECO:0000269|PubMed:16920782}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009792084.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_009792091.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_016445600.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_019232112.10.0PREDICTED: transcription factor-like protein DPB isoform X1
RefseqXP_019232113.10.0PREDICTED: transcription factor-like protein DPB isoform X1
SwissprotQ9FNY21e-146DPB_ARATH; Transcription factor-like protein DPB
TrEMBLA0A1J6L0240.0A0A1J6L024_NICAT; Transcription factor-like protein dpb
TrEMBLA0A1S3Y0J80.0A0A1S3Y0J8_TOBAC; transcription factor-like protein DPB isoform X1
TrEMBLA0A1U7XYQ30.0A0A1U7XYQ3_NICSY; transcription factor-like protein DPB isoform X1
STRINGXP_009792084.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA62652435
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03415.11e-123Transcription factor DP