PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07365g00017.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 350aa    MW: 39847.1 Da    PI: 7.2346
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07365g00017.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.97.7e-13154201355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               + h ++Er+RR+++ ++f  L  l+P +     kK++Ka++L  A++Y+k+Lq
  Niben101Scf07365g00017.1 154 QDHIIAERKRREKLSQRFIALSALIPGL-----KKMDKASVLGDAIKYLKQLQ 201
                               6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.821151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-10154201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.3E-17155213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.00E-12156205No hitNo description
SuperFamilySSF474595.23E-17156217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.8E-15157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MEYHGFNQQW PINSIDELRA ISIAASFGEN LHESFICQPN FGLKRPAEMS QDIYHERPLK  60
NPKTIQSWNS SYENDHILSS NLINSNNYTN QVVNVKPKEE MNSTMSSNSS ITFAADHQNL  120
VSQDSFANQS YMFKANYQEA KSTVTTNGKL TQAQDHIIAE RKRREKLSQR FIALSALIPG  180
LKKMDKASVL GDAIKYLKQL QEKVKTLEEQ TKKKSVESVI FVKKYELYGD GENSSSDENY  240
SSGTLPIDEP LPEIEARFSE RDVLVRIHCE KKKGLVDKTV AEIEKLHLSV INTCALSFGT  300
SALDITIIAQ VEKFNEYQVV GERDKKTTYF STVIRIFDRI YMNLAMICKA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A7e-14155229880Transcription factor MYC2
5gnj_B7e-14155229880Transcription factor MYC2
5gnj_E7e-14155229880Transcription factor MYC2
5gnj_F7e-14155229880Transcription factor MYC2
5gnj_G7e-14155229880Transcription factor MYC2
5gnj_I7e-14155229880Transcription factor MYC2
5gnj_M7e-14155229880Transcription factor MYC2
5gnj_N7e-14155229880Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779237.10.0PREDICTED: transcription factor bHLH18-like
RefseqXP_016484096.10.0PREDICTED: transcription factor bHLH18-like
TrEMBLA0A1S4B5E30.0A0A1S4B5E3_TOBAC; transcription factor bHLH18-like
TrEMBLA0A1U7WH050.0A0A1U7WH05_NICSY; transcription factor bHLH18-like
STRINGXP_009779237.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17602461
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-58bHLH family protein