PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07322g00013.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 344aa MW: 38804.1 Da PI: 9.5198

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07322g00013.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.7	5e-09	313	338	4	29
HHHHHHHHHHHHHHHHHHHHHCTSCC CS HLH 4 ahnerErrRRdriNsafeeLrellPk 29 h + ErrRR+++N++f+ Lr+llP+ Niben101Scf07322g00013.1 313 HHMISERRRREKLNDSFQLLRSLLPP 338 68899********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	8.51E-8	304	340	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	10.328	309	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.09E-7	309	338	No hit	No description
Gene3D	G3DSA:4.10.280.10	5.5E-7	312	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.5E-6	313	338	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 344 aa Download sequence Send to blast
MDSIFFLEEG DRAVFLLKIM ESLGCTYICL WQYFQPSNRI PGLAFKNNVP YMELQFADFQ 60 SHASNPVQLQ FYQEAGIKTV ICMRCSIGEI EVGMTSSPQV NLEIGMTNLF AEYFSRQAAA 120 PARGIPNQLL PIDQNRPSSS SSFSIDSPGE YSALLFNVAS TSPYVPEPPR TDTFSDQTIR 180 PIPLVSATAT PYQPAIQTLN QIQGIQLPTV ETEDAALTRA YLAVMTSPSS SSSSRQSREN 240 LPTDYNKIAT QKATAFRRFR SGVGSNLPIA TATTRRQNMF RRSINFFRNL NMMRSRQEQM 300 QPNPRAPTST QVHHMISERR RREKLNDSFQ LLRSLLPPGT KVWF

Sequence ? help Back to Top

Protein Sequence Length: 344 aa Download sequence Send to blast

MDSIFFLEEG DRAVFLLKIM ESLGCTYICL WQYFQPSNRI PGLAFKNNVP YMELQFADFQ  60
SHASNPVQLQ FYQEAGIKTV ICMRCSIGEI EVGMTSSPQV NLEIGMTNLF AEYFSRQAAA  120
PARGIPNQLL PIDQNRPSSS SSFSIDSPGE YSALLFNVAS TSPYVPEPPR TDTFSDQTIR  180
PIPLVSATAT PYQPAIQTLN QIQGIQLPTV ETEDAALTRA YLAVMTSPSS SSSSRQSREN  240
LPTDYNKIAT QKATAFRRFR SGVGSNLPIA TATTRRQNMF RRSINFFRNL NMMRSRQEQM  300
QPNPRAPTST QVHHMISERR RREKLNDSFQ LLRSLLPPGT KVWF

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	317	322	ERRRRE
2	318	323	RRRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009624851.2	0.0	PREDICTED: putative transcription factor bHLH041 isoform X1
TrEMBL	A0A1U7XNL1	0.0	A0A1U7XNL1_NICSY; putative transcription factor bHLH041 isoform X1
STRING	XP_009793632.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4567	23	39

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56960.1	8e-22	bHLH family protein