PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07311g00005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 205aa    MW: 23897 Da    PI: 7.4459
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07311g00005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding223.7e-072064345
                              SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                               WT+eE +l+  a++ +  +   +W  +a +++ g++  ++   +q
  Niben101Scf07311g00005.1 20 IWTKEENKLFESAIAIYDENtpnRWFHVADMIP-GKSVLDVMMQYQ 64
                              5******************9*************.***999887777 PP
2Myb_DNA-binding44.92.7e-14110154347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                               +WT+eE+ +++ +  ++G+g+W+ I+++m   Rt+ q+ s+ qky
  Niben101Scf07311g00005.1 110 PWTEEEHRRFLMGLDKYGKGDWRNISKKMVISRTPTQVASHAQKY 154
                               8*****************************99************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.6091367IPR017877Myb-like domain
SuperFamilySSF466893.18E-111666IPR009057Homeodomain-like
SMARTSM007173.9E-91769IPR001005SANT/Myb domain
PfamPF002491.1E-52165IPR001005SANT/Myb domain
CDDcd001671.04E-62166No hitNo description
Gene3DG3DSA:1.10.10.603.7E-13101159IPR009057Homeodomain-like
PROSITE profilePS5129421.106103159IPR017930Myb domain
SuperFamilySSF466891.38E-16104158IPR009057Homeodomain-like
TIGRFAMsTIGR015573.3E-18106158IPR006447Myb domain, plants
SMARTSM007174.7E-12107157IPR001005SANT/Myb domain
PfamPF002491.2E-12110154IPR001005SANT/Myb domain
CDDcd001672.35E-9110154No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
METIFPTSSS WMMQQNKKSI WTKEENKLFE SAIAIYDENT PNRWFHVADM IPGKSVLDVM  60
MQYQELAADV CDIEAGLVPN PGYFASSDCG LQTLRKRGRS CDQERKKGVP WTEEEHRRFL  120
MGLDKYGKGD WRNISKKMVI SRTPTQVASH AQKYYQRQLS GCKDKRRPNV VKYWNSSSDE  180
DLMDFLAYPY EISSKSWDEH GAIWD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19399LRKRGRS
294106RKRGRSCDQERKK
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019232856.11e-138PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-65DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A1J6L1Z61e-136A0A1J6L1Z6_NICAT; Transcription factor myb1r1
STRINGXP_009766549.11e-133(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA45824140
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11280.24e-76MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]