PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07310g01001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 223aa MW: 24503.2 Da PI: 8.4882 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.8 | 7.3e-20 | 28 | 76 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +gr++AeIrd ++ ++r++lg+f++ae+Aa+a++aa+++l+g Niben101Scf07310g01001.1 28 FRGVRKRP-WGRFAAEIRDpWK----KTRVWLGTFDSAEDAARAYDAAARALRG 76 8*******.**********883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00380 | 1.6E-35 | 27 | 90 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.31E-18 | 27 | 84 | No hit | No description |
Pfam | PF00847 | 8.9E-13 | 27 | 76 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.275 | 27 | 84 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-32 | 28 | 84 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.66E-22 | 28 | 85 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.8E-10 | 28 | 39 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.8E-10 | 50 | 66 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MRRGRAAAVP APVAGEPNGS GGSKDIRFRG VRKRPWGRFA AEIRDPWKKT RVWLGTFDSA 60 EDAARAYDAA ARALRGPKAK TNFPLPYAHH HHFNQGLNTN NDPFVDSRFY PKDYPIISQR 120 PTSSSMSSTV ESFSGPRPPP APRQQTTASS RKYPRSPPVV PDDCHSDCDS SSSVVDHGDC 180 EKENDNDNIA SSSFRKPLLF DLNLPPPMDD AGADDLHCTA LCL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 22 | 96 | 9 | 78 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Probably acts as a transcriptional repressor and may regulate other AtERFs (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001312653.1 | 1e-109 | ethylene-responsive transcription factor 3 | ||||
Refseq | XP_009780689.1 | 1e-109 | PREDICTED: ethylene-responsive transcription factor 3 | ||||
Swissprot | Q9SXS8 | 1e-110 | ERF3_TOBAC; Ethylene-responsive transcription factor 3 | ||||
TrEMBL | A0A1U7X1D5 | 1e-108 | A0A1U7X1D5_NICSY; ethylene-responsive transcription factor 3 | ||||
TrEMBL | R4WAI7 | 1e-108 | R4WAI7_TOBAC; Ethylene response factor #227 | ||||
STRING | XP_009780689.1 | 1e-109 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3330 | 23 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 9e-24 | ethylene responsive element binding factor 3 |