PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07278g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 275aa MW: 30636.5 Da PI: 7.7834

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07278g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	42.8	9.7e-14	90	136	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h Er RR+++++ f++L llP++ +K +K++i+ +Av+YIk Lq Niben101Scf07278g02005.1 90 HILTERERRKKMRNMFSNLHALLPQL----PPKADKSTIVDEAVNYIKTLQ 136 7789*******************6....39****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.57E-16	84	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	14.272	85	135	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.6E-15	89	147	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.67E-13	90	140	No hit	No description
Pfam	PF00010	4.8E-11	90	136	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-10	91	141	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
MNEGSDRDCL VWENQGWLIL NSNNLDASEE KFAGDKVSDP NRSNTSHDQP RTATKETKAA 60 ARGRKRTASG PKESDEGKCG GEGESDHEIH ILTERERRKK MRNMFSNLHA LLPQLPPKAD 120 KSTIVDEAVN YIKTLQNTLQ KLQNQKLEKL HCLTATMNSN DLSIITSQKL LESNNREIFL 180 ADQGSTSNST AITPTNNNNN NTTPFSNIPT VFQTWTSPNA ILSVCGEKAH ISICCLKKPG 240 ILSGICFVLE KYKIEMISAQ VSSDHHRCLF MIQAH

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262222.1	1e-170	PREDICTED: transcription factor bHLH95-like
TrEMBL	A0A1J6J3K1	1e-169	A0A1J6J3K1_NICAT; Transcription factor bhlh95
STRING	XP_009627647.1	1e-168	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1324	23	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49770.1	1e-35	bHLH family protein