PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07242g05006.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

M-type_MADS

Protein Properties

Length: 284aa MW: 32357.2 Da PI: 5.3859

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07242g05006.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	90.4	9.3e-29	9	58	1	50
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s Niben101Scf07242g05006.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58 68***********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	29.857	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	3.5E-38	1	60	IPR002100	Transcription factor, MADS-box
CDD	cd00265	2.25E-39	2	75	No hit	No description
SuperFamily	SSF55455	1.26E-30	2	82	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-26	3	23	IPR002100	Transcription factor, MADS-box
PROSITE pattern	PS00350	0	3	57	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	5.4E-27	10	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-26	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	9.1E-26	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 284 aa Download sequence Send to blast
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCETDR TYQAASPASV DSHIEVQQEI 120 LKYKTQLEDM DRRLRTYEGD LCEITTQVLE ETYNSPQTQT TTPQMDFASQ NVNVANNAAT 180 SDSIPNTSSN TFMDWVPHSQ RDPHVQILNF LDSNGLLPFS PNNRFENDPP RPTSSFEDII 240 DVNNAPWPPL YPTGNDPFPE AQPRERALLE LFLSQLTPVN QDHL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6byy_A	4e-17	1	75	1	74	MEF2 CHIMERA
6byy_B	4e-17	1	75	1	74	MEF2 CHIMERA
6byy_C	4e-17	1	75	1	74	MEF2 CHIMERA
6byy_D	4e-17	1	75	1	74	MEF2 CHIMERA
6bz1_A	5e-17	1	75	1	74	MEF2 CHIMERA
6bz1_B	5e-17	1	75	1	74	MEF2 CHIMERA
6bz1_C	5e-17	1	75	1	74	MEF2 CHIMERA
6bz1_D	5e-17	1	75	1	74	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269\|PubMed:19211705}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019262549.1	0.0	PREDICTED: agamous-like MADS-box protein AGL104
Swissprot	Q9LM46	6e-47	AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBL	A0A314L9F1	0.0	A0A314L9F1_NICAT; Agamous-like mads-box protein agl104
STRING	XP_009790826.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6183	19	25

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G22130.1	4e-49	AGAMOUS-like 104

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]