PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07223g01008.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

MYB_related

Protein Properties

Length: 350aa MW: 38774.9 Da PI: 9.8975

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07223g01008.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	44.9	2.7e-14	33	77	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r +WT+eE++++++a +++ + Wk+I + +g +t q++s+ qky Niben101Scf07223g01008.1 33 RESWTEEEHDKFLEALQLFDRD-WKKIEEFVG-SKTVIQIRSHAQKY 77 789***************77.*****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.05E-17	27	83	IPR009057	Homeodomain-like
PROSITE profile	PS51294	16.473	28	82	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.2E-7	31	83	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-18	31	80	IPR006447	Myb domain, plants
SMART	SM00717	7.8E-12	32	80	IPR001005	SANT/Myb domain
Pfam	PF00249	5.2E-12	33	77	IPR001005	SANT/Myb domain
CDD	cd00167	2.23E-9	35	78	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009651	Biological Process	response to salt stress
GO:0009723	Biological Process	response to ethylene
GO:0009733	Biological Process	response to auxin
GO:0009737	Biological Process	response to abscisic acid
GO:0009739	Biological Process	response to gibberellin
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0032922	Biological Process	circadian regulation of gene expression
GO:0043966	Biological Process	histone H3 acetylation
GO:0046686	Biological Process	response to cadmium ion
GO:0048573	Biological Process	photoperiodism, flowering
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MNSNSPSMAN NNSTPNDSSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIEE 60 FVGSKTVIQI RSHAQKYFLK VQKNGTTAHV PPPRPKRKAA HPYPQKAPKN VLVPLQASMG 120 YPSSMNFLPP GYPSWDDTSS LLNSPSGGTM PSQDEYHFQR IQADIGSKGA TLISNSGISG 180 IRSSSRTAPS SELPEQRKLD SVPHGIPDFA EVYSFIGSVF DPDTKGHVQK LKEMDPINFE 240 TVLLLMRNLT MNLSSPDFEP IKNVLSTYDL STKVVDLPAG AATFSNNGEP MRSCFLRARK 300 NVHHWKKSQS RGMDNSVAAS SSAFSLMLSG QGECSFLEVK LLLARSLPKP

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MNSNSPSMAN NNSTPNDSSG KKVRKPYTIT KSRESWTEEE HDKFLEALQL FDRDWKKIEE  60
FVGSKTVIQI RSHAQKYFLK VQKNGTTAHV PPPRPKRKAA HPYPQKAPKN VLVPLQASMG  120
YPSSMNFLPP GYPSWDDTSS LLNSPSGGTM PSQDEYHFQR IQADIGSKGA TLISNSGISG  180
IRSSSRTAPS SELPEQRKLD SVPHGIPDFA EVYSFIGSVF DPDTKGHVQK LKEMDPINFE  240
TVLLLMRNLT MNLSSPDFEP IKNVLSTYDL STKVVDLPAG AATFSNNGEP MRSCFLRARK  300
NVHHWKKSQS RGMDNSVAAS SSAFSLMLSG QGECSFLEVK LLLARSLPKP

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:21474993, ECO:0000269\|PubMed:21483796, ECO:0000269\|PubMed:23638299}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00338	DAP	Transfer from AT3G09600	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269\|PubMed:21205033, ECO:0000269\|PubMed:22902701, ECO:0000269\|PubMed:23638299}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009801551.1	0.0	PREDICTED: protein REVEILLE 8 isoform X2
Refseq	XP_016455642.1	0.0	PREDICTED: protein REVEILLE 8 isoform X1
Swissprot	Q8RWU3	1e-122	RVE8_ARATH; Protein REVEILLE 8
TrEMBL	A0A1S3YUJ3	0.0	A0A1S3YUJ3_TOBAC; protein REVEILLE 8 isoform X1
TrEMBL	A0A1U7YHZ1	0.0	A0A1U7YHZ1_NICSY; protein REVEILLE 8 isoform X2
STRING	XP_009801550.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA998	24	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G09600.1	1e-102	MYB_related family protein

Publications ? help Back to Top
Manfield IW, et al. Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis. Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9 [PMID:16845059] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Fogelmark K,Troein C Rethinking transcriptional activation in the Arabidopsis circadian clock. PLoS Comput. Biol., 2014. 10(7): p. e1003705 [PMID:25033214] Xing H, et al. LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors. Plant Signal Behav, 2015. 10(3): p. e1010888 [PMID:25848708] Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size. Plant Physiol., 2017. 173(4): p. 2308-2322 [PMID:28254761]