PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf07172g00019.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 236aa MW: 26422.4 Da PI: 7.1397 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 66.6 | 4.8e-21 | 107 | 156 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 y+GVr+++ +g+W+AeIrdp+ + +r++lg+f taeeAa+a+++a+ +++g Niben101Scf07172g00019.1 107 NYRGVRQRP-WGKWAAEIRDPR----KaARVWLGTFNTAEEAARAYDKAAIEFRG 156 59*******.**********94....36************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 3.6E-32 | 107 | 164 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 6.23E-34 | 107 | 163 | No hit | No description |
SMART | SM00380 | 3.3E-38 | 107 | 170 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.001 | 107 | 164 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-22 | 107 | 164 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.9E-15 | 107 | 156 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 108 | 119 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-12 | 130 | 146 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MQRSNKRFRE DGTSYTDQNN QQFSHFPRLT GEEEYSVMVS ALKNVINGVP AEQEPCPFCR 60 IKGCLGCDIF GTTSSAAVNF AESKIVAADD NKKKSTIIPI AKKKKKNYRG VRQRPWGKWA 120 AEIRDPRKAA RVWLGTFNTA EEAARAYDKA AIEFRGPRAK LNFSFADYTE NQEQQSTSSS 180 SPQQLPEPQL QQGNNAEFGS EILDQLMGDN EIQDWLTMMN FNGDFSDSTG GNVPSV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-23 | 106 | 163 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 91 | 105 | KKKSTIIPIAKKKKK |
2 | 100 | 106 | AKKKKKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502425.1 | 1e-130 | PREDICTED: ethylene-responsive transcription factor ERF109-like | ||||
Swissprot | Q9SZ06 | 5e-33 | EF109_ARATH; Ethylene-responsive transcription factor ERF109 | ||||
TrEMBL | A0A1S4CMZ7 | 1e-129 | A0A1S4CMZ7_TOBAC; ethylene-responsive transcription factor ERF109-like | ||||
STRING | XP_009609381.1 | 1e-129 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G34410.1 | 1e-32 | redox responsive transcription factor 1 |
Publications ? help Back to Top | |||
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