PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07169g02008.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 629aa    MW: 70396.5 Da    PI: 6.7404
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07169g02008.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.11.6e-11318374155
                       AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+ ++ a++k++g
  Niben101Scf07169g02008.1 318 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqSRKGRQ-GGYDMEEKAARSYDLAALKYWG 374
                               78*******************87776664446655.77******************98 PP
2AP246.58.9e-15417468155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Niben101Scf07169g02008.1 417 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 468
                               57****************988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.06E-18318382No hitNo description
PfamPF008477.9E-9318374IPR001471AP2/ERF domain
SuperFamilySSF541711.77E-13318384IPR016177DNA-binding domain
SMARTSM003801.0E-21319388IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-11319383IPR001471AP2/ERF domain
PROSITE profilePS5103217.148319382IPR001471AP2/ERF domain
PRINTSPR003673.4E-6320331IPR001471AP2/ERF domain
PfamPF008471.3E-9417468IPR001471AP2/ERF domain
CDDcd000181.34E-25417478No hitNo description
SuperFamilySSF541711.18E-17417478IPR016177DNA-binding domain
SMARTSM003809.6E-35418482IPR001471AP2/ERF domain
PROSITE profilePS5103219.019418476IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-18418477IPR001471AP2/ERF domain
PRINTSPR003673.4E-6458478IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007276Biological Processgamete generation
GO:0010492Biological Processmaintenance of shoot apical meristem identity
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 629 aa     Download sequence    Send to blast
MKSLSNDDNS SNTNSNSHWL GFSLSPHINS LEGPSPDQHH TQPCSSDVPS SVPIRFSPTL  60
LTYPGMFYNT EGDNAAFCSS YSVMPLKSDG SLCIMKAFNR SQQPQGMVSS TPKLEDFFGD  120
ASIGTNHYED CNRGGMAHSL DNNIYYNQHQ ENETSNSQDF LNHFHDNSRQ QQQQHYYPDF  180
LAFRGHELYH STEQGKTECN PQVPTMPVDE MSGMNNWVSR NYQNPNAHAL EQNMIGRMAD  240
NSGESGSSGA MTYGDFKSLS LSMSPGSQSS CVTGTQQISP TVADCIAMET KKRGPEKVEN  300
QKQIVHRKSI DTFGQRTSQY RGVTRHRWTG RYEAHLWDNS CKKEGQSRKG RQGGYDMEEK  360
AARSYDLAAL KYWGPSTHIN FPLENYQQEL EEMKTMTRQE YIANIRRKSS GFSRGASIYR  420
GVTRHHQHGR WQARIGRVAG NKDLYLGTFS TQEEAAEAYD IAAIKFRGVN AVTNFDVSRY  480
DVERIMESNT LLAGELARRK KDTETSKVIS NQILENQNLI QNKEEIGNVV DWTMTLHQSS  540
SVGVDTNTMS STLREVDESE RINTYLSNAS SLVTSLGSSR EGSPAKNNSH SMPQSAPKLI  600
TSPATNITSW ISSAQLRPDV PVFAAWTDA
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00088SELEXTransfer from AT4G37750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230180.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A1J6J6A40.0A0A1J6J6A4_NICAT; Ap2-like ethylene-responsive transcription factor ant
STRINGXP_009769992.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20742460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-131AP2 family protein