PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07152g03001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 356aa    MW: 40046.4 Da    PI: 7.3262
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07152g03001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013236258123
                               EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                               ++C++Cg  F++   L  H+r+H
  Niben101Scf07152g03001.1 236 HTCSYCGAEFNSGQALGGHMRRH 258
                               79********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.6E-8150173No hitNo description
PfamPF139128.7E-11150175IPR007087Zinc finger, C2H2
PROSITE profilePS501579.64151178IPR007087Zinc finger, C2H2
SMARTSM003550.59151173IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280153173IPR007087Zinc finger, C2H2
SuperFamilySSF576675.6E-8231258No hitNo description
SMARTSM003550.0084236258IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.221236263IPR007087Zinc finger, C2H2
PfamPF139127.5E-12236260IPR007087Zinc finger, C2H2
PROSITE patternPS000280238258IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MEAPQEVVGV SKDLSHIVKG KRTKRLRPQS PIPFTIVVHS STEDDSGDDK DIAFINSNNN  60
NNNSQPFATS AENFPNENVP TEEEEETAKC LILLSQGGHP SSRQRFIESS PEKLFNLFND  120
DMELHPSKFN SKRYVETTNI GNGAKVGTYV YECKTCNCTF PSFQALGGHR TSHKKPKSLT  180
IEPKKPFLYF SDQDEAPTNY KHNNNINKLS PLSPHSTQFS NFNMESPNNK SSPRIHTCSY  240
CGAEFNSGQA LGGHMRRHRG GANTSLCLSP LNTQAFSVEE FPNNLKKPRN IGLSLDLNLP  300
APEDQNYRSR NVQYPPKYPI AIEQQQDQEQ TQKKQQQQEQ TALVLSTTPQ LIDCHY
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019225932.10.0PREDICTED: zinc finger protein ZAT5-like
TrEMBLA0A314KSU50.0A0A314KSU5_NICAT; Zinc finger protein zat5
STRINGXP_009609087.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA40152343
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04390.15e-51C2H2 family protein