PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07121g05012.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family HD-ZIP
Protein Properties Length: 335aa    MW: 37386.3 Da    PI: 8.4832
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07121g05012.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox54.22.5e-17173227256
                               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                  Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                               rk+ ++tk+q   Lee F+++++++ +++  LAk+l+L  rqV vWFqNrRa+ k
  Niben101Scf07121g05012.1 173 RKKLRLTKQQSAFLEESFKEHNTLNPKQKLVLAKQLKLRPRQVEVWFQNRRARTK 227
                               678899***********************************************98 PP
2HD-ZIP_I/II118.43.8e-38173262191
               HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 
                               +kk+rl+k+q+++LEesF+e+++L+p++K  la++L+l+prqv+vWFqnrRARtk+kq+E d+e+Lkr+ ++l+een+rL+ke +
  Niben101Scf07121g05012.1 173 RKKLRLTKQQSAFLEESFKEHNTLNPKQKLVLAKQLKLRPRQVEVWFQNRRARTKLKQTELDCEYLKRCRETLTEENKRLQKELQ 257
                               69*********************************************************************************** PP

               HD-ZIP_I/II  86 eLreel 91 
                               eLr +l
  Niben101Scf07121g05012.1 258 ELR-AL 262
                               **9.44 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-16162228IPR009057Homeodomain-like
SuperFamilySSF466897.7E-18165230IPR009057Homeodomain-like
PROSITE profilePS5007116.244169229IPR001356Homeobox domain
SMARTSM003891.7E-13171233IPR001356Homeobox domain
CDDcd000864.61E-14173230No hitNo description
PfamPF000466.5E-15173227IPR001356Homeobox domain
PROSITE patternPS000270204227IPR017970Homeobox, conserved site
SMARTSM003403.5E-22229272IPR003106Leucine zipper, homeobox-associated
PfamPF021832.3E-7229263IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MELALSLGRD TQKPFSFLEK STNNSSSHDQ RFCMGLEKSN NTHEDENNGG RKILHLDLLP  60
LSAVPLNQIM PSQIPFPWLS QNIAAEPGLT NGPAGKVLDM DRWPMVVAEE AEEGLDVSSP  120
NSNSAVSSFQ MKFSSIYRNG NSRSLIGKRD HFEGGDNTER GVSDEDENNG LGRKKLRLTK  180
QQSAFLEESF KEHNTLNPKQ KLVLAKQLKL RPRQVEVWFQ NRRARTKLKQ TELDCEYLKR  240
CRETLTEENK RLQKELQELR ALKFSQPLYM QLPATTLTMC PSCERVAAAT TDAAFPTAAA  300
TATANAATMN TTLSLAKPNL FPFPPAQVHA PQAAS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1221229RRARTKLKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009766178.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X2
RefseqXP_016464966.10.0PREDICTED: homeobox-leucine zipper protein HOX11-like isoform X1
SwissprotP466651e-80HAT14_ARATH; Homeobox-leucine zipper protein HAT14
TrEMBLA0A1S3ZKR30.0A0A1S3ZKR3_TOBAC; homeobox-leucine zipper protein HOX11-like isoform X1
TrEMBLA0A1U7VIL10.0A0A1U7VIL1_NICSY; homeobox-leucine zipper protein HOX11-like isoform X2
STRINGXP_009766177.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA29024186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06710.14e-68homeobox from Arabidopsis thaliana