PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07109g00007.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 205aa    MW: 23413.1 Da    PI: 7.7005
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07109g00007.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.73.1e-191461147
                              TSSS-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqky 47
                              +g+WT+eEde+l+ +++ +G g  +W++Ia +++ gRt++++k++w+++
  Niben101Scf07109g00007.1 14 KGAWTKEEDERLIAYIRNHGEGcwRWSLIAGRLP-GRTDNEIKNYWNTH 61
                              79********************************.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.21E-17369IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-23569IPR009057Homeodomain-like
PROSITE profilePS5129424.555966IPR017930Myb domain
SMARTSM007175.8E-141364IPR001005SANT/Myb domain
PfamPF002495.6E-171461IPR001005SANT/Myb domain
CDDcd001671.88E-141662No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MGRSPCCEKA HTNKGAWTKE EDERLIAYIR NHGEGCWRWS LIAGRLPGRT DNEIKNYWNT  60
HIRRKLLSRG IDPTTHRPVN EPNTTPKITT ISFTARNNKD EEDQKMINVK GELSGLSQED  120
EISSNSSQFQ ELQCPDLNLE LRISPPYQQN YQNDQDLKPS ARCFACSLGI QNSKDCSCSK  180
NNIASYDFLG LKTNGVLDYR TLETK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019260747.11e-136PREDICTED: myb-related protein 308-like
SwissprotP813931e-67MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A314LEE71e-134A0A314LEE7_NICAT; Transcription repressor myb4
STRINGXP_009804432.11e-134(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34990.17e-61myb domain protein 32
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]