PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf07073g04002.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 334aa MW: 37779.1 Da PI: 4.9204

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf07073g04002.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.5	2e-12	166	209	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L Niben101Scf07073g04002.1 166 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 209 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.643	160	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.84E-15	163	219	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.0E-10	166	209	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.8E-13	166	215	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.38E-5	167	214	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.5E-15	167	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	2.49E-4	260	301	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MELTQQDLLE ELLAPRKESW STFPSGVNEF FPNGWTFELP FYQNPEFVAL NSSLLGLITP 60 PESNIQCPLI TSPESYPLIL DSFTATDNIN DTILLPEEYN NRAMVENQEE AGIISSDFHG 120 LKEDLNSFST NDVKVEEANS RIMGVSNVGE KKNKVKKLEG QPSKNLMAER RRRKRLNDRL 180 SMLRSIVPKI SKMDRTSILG DAIDYMKELL EKIHTLREDD NVKEEIKDIK FVGNLKELKP 240 NEALVRKPPK FEVERRNVDT RIEICCAAKP GLLLSTVSTL EALGLDVQQC VISCFSDFSL 300 QASCSEAREH RTILSSEDVK QTLFKTAGYG GRCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	168	175	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019225226.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	6e-84	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A314KTP2	0.0	A0A314KTP2_NICAT; Transcription factor bhlh93
STRING	XP_009797668.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-84	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]