PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07066g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 241aa    MW: 27224.8 Da    PI: 8.611
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07066g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.51.4e-171461148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEde+l+ ++k +G g+W++ ++  g+ R++k+c++rw +yl
  Niben101Scf07066g00001.1 14 KGAWTKEEDERLIAYIKVHGEGCWRSLPKAAGLLRCGKSCRLRWINYL 61
                              79******************************99************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.0E-24564IPR009057Homeodomain-like
PROSITE profilePS5129423.811965IPR017930Myb domain
SMARTSM007177.9E-141363IPR001005SANT/Myb domain
PfamPF002492.6E-151461IPR001005SANT/Myb domain
SuperFamilySSF466891.54E-221589IPR009057Homeodomain-like
CDDcd001676.83E-111661No hitNo description
PROSITE profilePS500904.91362102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.1E-96588IPR009057Homeodomain-like
SMARTSM007174566142IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 241 aa     Download sequence    Send to blast
MGRSPCCEKS HTNKGAWTKE EDERLIAYIK VHGEGCWRSL PKAAGLLRCG KSCRLRWINY  60
LRPDLKRGNF TDEEDELIIK LHSLLGNKRK LLSRGIDPTT HRPMNEPNTQ KVTSISFASG  120
NYKDIEDEKM NIKAEFGTIK EDEISSRPQC PDLNLELRIS PPYQQNQQKR ALEQSSTGSW  180
RISPICFKCN LGLKNSKDCS CNDNSNGNGC SSSSNISMNI AAYDFLGLKT NGLDYRTLET  240
K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C1e-15138826100MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016487702.11e-147PREDICTED: myb-related protein 308-like
SwissprotP813931e-88MYB08_ANTMA; Myb-related protein 308
TrEMBLA0A1S4BFP51e-146A0A1S4BFP5_TOBAC; myb-related protein 308-like
STRINGXP_009786709.11e-146(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38620.15e-77myb domain protein 4
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]