PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07050g00010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family AP2
Protein Properties Length: 460aa    MW: 51186.5 Da    PI: 6.5595
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07050g00010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-17147196155
                       AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                               s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  Niben101Scf07050g00010.1 147 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 196
                               78*******************......55************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.86E-12147206No hitNo description
PfamPF008472.1E-9147196IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16147205IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.106.0E-17148204IPR001471AP2/ERF domain
PROSITE profilePS5103217.82148204IPR001471AP2/ERF domain
SMARTSM003801.9E-31148210IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-5239283IPR016177DNA-binding domain
CDDcd000189.34E-11239284No hitNo description
SMARTSM003801.8E-9240288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MFDLNLGFEE FAMDDETVHI SYDTTTSEKL RELQMENSGT SNSSIVNVET SSTAGDDEFF  60
SCSDDRRRND GYAFDILKGN EYEENEFVTK ELFPLTGGEA AAELLSPQQR LDLSANYGGT  120
AEQRIVVVPQ QRQQAKKSRR GPRSKSSQYR GVTFYRRTGR WESHIWDCGK QVYLGGFDTA  180
HAAARAYDRA AIKFRGLDAD INFNVTDYHD DLKQMSNFTK EEFVHILRRQ STGFSRGSSK  240
YRGVTLHKCG RWEARMGQFL GKKAYDKAAI KCSGKEAVTS FELSTYEGEL SPEDNGGPSH  300
NLDLNLGIAS SSLADEQHGN NTCQKVNSEF LLASNGLTEY KGAMHSPSTT MGSKLPHRPQ  360
LLTDRPLLWN GVNTSVFPTF KETAIGKGME VDSSPNWTRQ DQHPYGGSPS VPLFSTAASS  420
GFANSTSAAA HEHHFSTVPL PYHHSPSLAN MNFAHYYCRS
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018627724.10.0PREDICTED: ethylene-responsive transcription factor RAP2-7-like isoform X2
SwissprotQ9SK032e-90RAP27_ARATH; Ethylene-responsive transcription factor RAP2-7
TrEMBLA0A1S4B1530.0A0A1S4B153_TOBAC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_009606014.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA59124116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.12e-88related to AP2.7