PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf07030g01003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family G2-like
Protein Properties Length: 398aa    MW: 44791.7 Da    PI: 9.8064
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf07030g01003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like101.94.1e-32209262255
                   G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                               pr+rWt+ LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+
  Niben101Scf07030g01003.1 209 PRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 262
                               9****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.15E-15206263IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-28206262IPR009057Homeodomain-like
TIGRFAMsTIGR015576.4E-24209263IPR006447Myb domain, plants
PfamPF002495.7E-7210261IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0048481Biological Processplant ovule development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 398 aa     Download sequence    Send to blast
MELFPAQPDL SLQISPPNSK PSSTNWKRSS NNSTTEDEVD LMFWRRALES RNSNTSSLSK  60
PRNVNNNNTS LFELSLSNPK PTPEFKSGPF HHIQNTHTNF IHSLQQNQGL NSELSFLRPI  120
RGIPVYHQNP PASHYPIFGQ QTFDNTSTAA TLPMRSSGGC INNNNNKTMS NSSSSRIHFQ  180
ASQQYHHQAG VMRSRFLSRF PAKRTTRAPR MRWTSSLHAR FVHAVELLGG HERATPKSVL  240
ELMDVKDLTL AHVKSHLQMY RTIKTTDRVA VPASSGQSEV FDNGSSGDTS EDLMPEIENS  300
RKSDLSDQQG RNNNMHLQDK EYHGLWSNSS SRESWQLHGK LGGYQGNIPS LEKLQQKEME  360
AKCLSYERIS GEVSSSSITE TSPEKKPNLE FTLGRPSQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-16210264357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-16210264357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-16210264357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-16210264357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-16210264458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that regulates lateral organ polarity. Promotes abaxial cell fate during lateral organd formation. Functions with KAN1 in the specification of polarity of the ovule outer integument. {ECO:0000269|PubMed:11525739, ECO:0000269|PubMed:15286295, ECO:0000269|PubMed:16623911, ECO:0000269|PubMed:17307928}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00174DAPTransfer from AT1G32240Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019247858.10.0PREDICTED: probable transcription factor KAN2 isoform X1
SwissprotQ9C6161e-88KAN2_ARATH; Probable transcription factor KAN2
TrEMBLA0A1J6ID690.0A0A1J6ID69_NICAT; Putative transcription factor kan2
STRINGXP_009798333.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA27382255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32240.17e-68G2-like family protein
Publications ? help Back to Top
  1. Machida C,Nakagawa A,Kojima S,Takahashi H,Machida Y
    The complex of ASYMMETRIC LEAVES (AS) proteins plays a central role in antagonistic interactions of genes for leaf polarity specification in Arabidopsis.
    Wiley Interdiscip Rev Dev Biol, 2015 Nov-Dec. 4(6): p. 655-71
    [PMID:26108442]