PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf06999g01003.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 220aa MW: 25851.8 Da PI: 6.2491 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.5 | 4.2e-15 | 16 | 63 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+W +eEde+l v+ lG ++W++ a+ g++R++k+c++rw +yl Niben101Scf06999g01003.1 16 KGPWFEEEDERLTYIVAILGERRWDALAKASGLRRSGKSCRLRWMNYL 63 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 52.8 | 9.2e-17 | 72 | 114 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T++E+ l+v++ kq+G++ W++Ia+ ++ gRt++++k++w+++l Niben101Scf06999g01003.1 72 ITEDEERLIVQLQKQFGNK-WSKIAKQLP-GRTDNEIKNYWRSHL 114 59*****************.*********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.323 | 11 | 63 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.11E-27 | 14 | 110 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.6E-11 | 15 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-12 | 16 | 63 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-20 | 17 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.68E-8 | 18 | 63 | No hit | No description |
PROSITE profile | PS51294 | 26.955 | 64 | 118 | IPR017930 | Myb domain |
SMART | SM00717 | 6.9E-16 | 68 | 116 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-24 | 71 | 117 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.0E-14 | 72 | 114 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.22E-11 | 73 | 114 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 220 aa Download sequence Send to blast |
MAFQLQLTMQ EEKLRKGPWF EEEDERLTYI VAILGERRWD ALAKASGLRR SGKSCRLRWM 60 NYLRPNLKHG HITEDEERLI VQLQKQFGNK WSKIAKQLPG RTDNEIKNYW RSHLRKKALI 120 YEQGSNTSTN SELKSSFGKD DCSSADSLTE MEVSNYSIDH SSNETRLSDW IPSWTYEQSQ 180 MEHHMYLCTL NICSCYPQCF SEDNNNSIST WDDTSSSIWE |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gv2_A | 6e-29 | 14 | 118 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-28 | 14 | 118 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-28 | 14 | 118 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1mse_C | 6e-29 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-29 | 14 | 118 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00406 | DAP | Transfer from AT3G53200 | Download |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269|PubMed:9839469}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019235520.1 | 1e-148 | PREDICTED: transcription factor MYB57-like | ||||
Swissprot | Q9SCP1 | 1e-53 | MYB27_ARATH; Transcription factor MYB27 | ||||
TrEMBL | A0A1S4AKD8 | 1e-146 | A0A1S4AKD8_TOBAC; transcription factor MYB48-like | ||||
STRING | XP_009625011.1 | 1e-155 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA12 | 24 | 2154 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G53200.1 | 2e-55 | myb domain protein 27 |
Publications ? help Back to Top | |||
---|---|---|---|
|