PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06996g02005.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

GRAS

Protein Properties

Length: 646aa MW: 73389.9 Da PI: 6.3648

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06996g02005.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	357.7	1.8e-109	268	641	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 + lL++cA+a+ss d++ a++lL r+++++s++gd ++Rla+y+++AL+arl+++++ y +++s+ s ++ l+a+k+f Niben101Scf06996g02005.1 268 RGLLTQCAQAMSSYDTRTANELLMRIRQHSSSHGDGTERLAHYLANALEARLSSTGTASYTVFASSRIS---AAHILKAYKAFIT 349 679*************************************************888888888777777...999****** PP GRAS 87 vsPilkfshltaNqaIleavege..ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLa 166 ++P+ +s++ aN+ I + + g +++HiiDf+i +G+QWp+L+q+L++ ++g p +lRiTgv+ p++g +e++e tg+rL+ Niben101Scf06996g02005.1 350 ACPFKLMSNIFANKYIKKLITGGapRTIHIIDFGILYGFQWPCLIQSLSALSRGEPiKLRITGVELPQPGfrPAERVEDTGRRLK 434 ****************998899*******************99977777********9*********** PP GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnse 251 k++++++vpf+fn+ +ak++e+++leeL+++++E+l+Vn+ ++l +++de+v +s+rd vL+l+++++P+++++ + +n++ Niben101Scf06996g02005.1 435 KYCDRFHVPFKFNA-IAKKWENITLEELAIDRNEVLVVNSLYRLGNIPDETVVPTSPRDVVLDLIRRIRPDMFIHGVVNGTYNTP 518 **********.7***************************************************************** PP GRAS 252 sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336 Fl+rf eal ++s+lfd++ea++pre+e+r+ E+e+++r+++nv+aceg+er+er et+++W+ r +aGFk++pl++++++ Niben101Scf06996g02005.1 519 FFLTRFREALFHFSTLFDMFEATMPREDEDRKLFEEEVFARDAMNVIACEGTERVERPETYKQWQLRCARAGFKQLPLDQEIVNF 603 ********************************************************************************* PP GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++ +r+ + + ++v+e+s ++++gWk+r ++++S+W+ Niben101Scf06996g02005.1 604 VSNKVRREYHKDFSVDEDSRWMLQGWKGRVVYALSCWK 641 ****9888***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	62.164	241	621	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.1E-107	268	641	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010200	Biological Process	response to chitin

Sequence ? help Back to Top
Protein Sequence Length: 646 aa Download sequence Send to blast
MEAIFQEQVF PGADAFIFRH PSSILVDPRE DHVVQNGTIV NCHSFEDYSH AHSNVSDPIV 60 RDGDSSPKEE GEGEGEGDHS DAMYKYISQM LMEEEDLEYK PCMFHDCMAL QAAEKYFSDV 120 LHGSDNITNS PQFSAIIPQD KVSSSCPDFS NTSPDSIESL QSDLNFESPV SVKSLSGSLL 180 TSFHSPSGLR EKKNHHRQDD DHQRSNKQLA TFAADESEPL EMYDNVLLLC PNNPCVPPNE 240 VKKPTKVGRP RSGGKKHSSS KKEIVDLRGL LTQCAQAMSS YDTRTANELL MRIRQHSSSH 300 GDGTERLAHY LANALEARLS STGTASYTVF ASSRISAAHI LKAYKAFITA CPFKLMSNIF 360 ANKYIKKLIT GGAPRTIHII DFGILYGFQW PCLIQSLSAL SRGEPIKLRI TGVELPQPGF 420 RPAERVEDTG RRLKKYCDRF HVPFKFNAIA KKWENITLEE LAIDRNEVLV VNSLYRLGNI 480 PDETVVPTSP RDVVLDLIRR IRPDMFIHGV VNGTYNTPFF LTRFREALFH FSTLFDMFEA 540 TMPREDEDRK LFEEEVFARD AMNVIACEGT ERVERPETYK QWQLRCARAG FKQLPLDQEI 600 VNFVSNKVRR EYHKDFSVDE DSRWMLQGWK GRVVYALSCW KPAEQF

Sequence ? help Back to Top

Protein Sequence Length: 646 aa Download sequence Send to blast

MEAIFQEQVF PGADAFIFRH PSSILVDPRE DHVVQNGTIV NCHSFEDYSH AHSNVSDPIV  60
RDGDSSPKEE GEGEGEGDHS DAMYKYISQM LMEEEDLEYK PCMFHDCMAL QAAEKYFSDV  120
LHGSDNITNS PQFSAIIPQD KVSSSCPDFS NTSPDSIESL QSDLNFESPV SVKSLSGSLL  180
TSFHSPSGLR EKKNHHRQDD DHQRSNKQLA TFAADESEPL EMYDNVLLLC PNNPCVPPNE  240
VKKPTKVGRP RSGGKKHSSS KKEIVDLRGL LTQCAQAMSS YDTRTANELL MRIRQHSSSH  300
GDGTERLAHY LANALEARLS STGTASYTVF ASSRISAAHI LKAYKAFITA CPFKLMSNIF  360
ANKYIKKLIT GGAPRTIHII DFGILYGFQW PCLIQSLSAL SRGEPIKLRI TGVELPQPGF  420
RPAERVEDTG RRLKKYCDRF HVPFKFNAIA KKWENITLEE LAIDRNEVLV VNSLYRLGNI  480
PDETVVPTSP RDVVLDLIRR IRPDMFIHGV VNGTYNTPFF LTRFREALFH FSTLFDMFEA  540
TMPREDEDRK LFEEEVFARD AMNVIACEGT ERVERPETYK QWQLRCARAG FKQLPLDQEI  600
VNFVSNKVRR EYHKDFSVDE DSRWMLQGWK GRVVYALSCW KPAEQF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	7e-40	271	641	8	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001312025.1	0.0	scarecrow-like protein 14
Refseq	XP_009774713.1	0.0	PREDICTED: scarecrow-like protein 14
Refseq	XP_016446065.1	0.0	PREDICTED: scarecrow-like protein 14
TrEMBL	A0A1U7W7V5	0.0	A0A1U7W7V5_NICSY; scarecrow-like protein 14
TrEMBL	Q1PCS0	0.0	Q1PCS0_TOBAC; GRAS1
STRING	XP_009774713.1	0.0	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA276	24	191

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G59450.1	1e-172	GRAS family protein