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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Niben101Scf06939g05008.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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| Family | bHLH | ||||||||
| Protein Properties | Length: 312aa MW: 35173.5 Da PI: 7.2655 | ||||||||
| Description | bHLH family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HLH | 34.1 | 4.8e-11 | 105 | 156 | 1 | 55 |
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
+r+ h ++Er+RR+++ + + Lr+l+P++ + ++ + a+i A++++k+L+
Niben101Scf06939g05008.1 105 QRMIHIAVERNRRKQMSEYLTVLRSLMPSS---YVQRADQASIIGGAINFVKELE 156
6999**************************...9******************995 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF47459 | 1.02E-15 | 103 | 173 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| CDD | cd00083 | 1.66E-11 | 103 | 160 | No hit | No description |
| Gene3D | G3DSA:4.10.280.10 | 3.5E-12 | 104 | 160 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| PROSITE profile | PS50888 | 14.456 | 104 | 155 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Pfam | PF00010 | 3.1E-8 | 105 | 156 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| SMART | SM00353 | 1.3E-9 | 110 | 161 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 312 aa Download sequence Send to blast |
MALETVVYPQ EQFGYFYNKE FYASTSSFPH SISNWESSSC NSMMQNQEKE YYWDISNSSP 60 EAAVACNNFD ENQLFLEAAD TSGGRRKRRR TARGSNKKRE ELENQRMIHI AVERNRRKQM 120 SEYLTVLRSL MPSSYVQRAD QASIIGGAIN FVKELEQHLQ TLEVQKRTST HDQLHENGIS 180 SLPLFANFFS FPQYSTTHSN HVSSSLAAAT NSSDPAAKNR SVMADIEVSL VDSHANLKIL 240 SKRRPKQLKK IVAGFQCLCL TILHLNVTSV DQMVLYTLSA KVDEGCQLTT VEEIAQAVNQ 300 LLAGIQEEAA SR |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 85 | 89 | RKRRR |
| 2 | 85 | 90 | RKRRRT |
| 3 | 105 | 116 | RMIHIAVERNRR |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_019239682.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
| Refseq | XP_019242175.1 | 0.0 | PREDICTED: transcription factor bHLH94-like | ||||
| TrEMBL | A0A1J6JWJ4 | 0.0 | A0A1J6JWJ4_NICAT; Transcription factor bhlh94 | ||||
| STRING | XP_009785047.1 | 0.0 | (Nicotiana sylvestris) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Asterids | OGEA1996 | 24 | 62 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G72210.1 | 4e-82 | bHLH family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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