PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06933g02005.1
Common NameNbCG1a
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 440aa    MW: 47307.9 Da    PI: 9.0963
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06933g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH36.96.2e-12427226
                              -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                              + e+Cr+f+r G C+yGdrCkF H+
  Niben101Scf06933g02005.1  4 RKEPCRNFLR-GSCQYGDRCKFLHV 27
                              789*******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010317.582229IPR000571Zinc finger, CCCH-type
SMARTSM003563.8E-7328IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-5429IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-9427IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.7E-8626IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 440 aa     Download sequence    Send to blast
MPPRKEPCRN FLRGSCQYGD RCKFLHVSQQ QPKPNPFGFG SQPSNFQNTN LQQTKSNPYG  60
FGVQNNFQPR GSNDLGPKQS PYKKKCSHVA SIRCAFENKW TRSTSTNSSS SRQSDNQPVA  120
PNHTCTDSDW CRRQIMEDFN NEKPMWLLTC YGHRKNGPCD VTGDVSYEEL RAAAYDDAKR  180
GQSLMSIVER ERNMLNSKAA EFENLLRNYV PPSTSVPNAQ SPFPGAASNA SLGAQSPFPG  240
TAPNASLSAQ SPFPGTAPNA SLSTQSPFPG AAPNASLRAQ SSFPPSASSF SQLGALLNTG  300
ASAPPTNTFG QPSPLGNSVK TSSSSGANAF SFGNAGSGSF GFGSQVTSQS HQNPFTPSNI  360
SASSERNPFS TSQHFPNSSG SQLPTPQRHF SASVAVSPFN INLTNAASTE EFSGDNSIWT  420
KKEWKIGEIP EAAPPDKYIF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019267519.10.0PREDICTED: zinc finger CCCH domain-containing protein 16 isoform X1
TrEMBLW6JLZ80.0W6JLZ8_NICBE; Nuclear pore complex protein CG1a
STRINGXP_009622533.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA94392022
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.21e-53C3H family protein