PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06916g01025.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family B3
Protein Properties Length: 938aa    MW: 107118 Da    PI: 8.4343
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06916g01025.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B338.32.3e-12331081798
                               E--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
                        B3  17 vlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                                +p +fa ++g + +    ++le +sg  W+vkl  +++ g+ +l++GW++F +   +  g f++F+++g+s f   v++f+
  Niben101Scf06916g01025.1  33 HIPDEFAMKYGANMRD--LVSLEVPSGALWKVKL--QNSNGMAWLKEGWNQFKEYYSIGFGYFLLFQYNGNSHF--SVSIFD 108
                               59********988655..8***************..**********************************9999..999987 PP
2B359.84.8e-19842937199
                               EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS
                        B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld 85 
                               f+  + p +v+++ +l +p +f++++ +++e    ++l+ ++gr+W+ +++++ +  r+  + GW+eF+ +ngLk+ D++vF+l+
  Niben101Scf06916g01025.1 842 FIVSMQPTHVSRNFLLNIPGNFFRRYFKEEE--ASVILRASDGRTWRARCSFQSNCARI-HSPGWREFALDNGLKVHDTCVFELM 923
                               67789999******************86644..46****************99998885.577*********************9 PP

                               SSSEE..EEEEE-S CS
                        B3  86 grsefelvvkvfrk 99 
                               +  e  l+v++fr+
  Niben101Scf06916g01025.1 924 EGIELVLNVTIFRA 937
                               88888899999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.22317110IPR003340B3 DNA binding domain
SMARTSM010198.9E-1020110IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-1731110IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.0E-1631117IPR015300DNA-binding pseudobarrel domain
PfamPF023627.4E-1033108IPR003340B3 DNA binding domain
CDDcd100171.85E-1134108No hitNo description
SuperFamilySSF1019361.55E-21836937IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.4E-24836937IPR015300DNA-binding pseudobarrel domain
CDDcd100172.37E-21840936No hitNo description
PfamPF023621.4E-17842937IPR003340B3 DNA binding domain
SMARTSM010191.3E-14842938IPR003340B3 DNA binding domain
PROSITE profilePS5086313.761842938IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 938 aa     Download sequence    Send to blast
MTPDIGLKVL LFPFGFFSLF FGPFLSDFGI IQHIPDEFAM KYGANMRDLV SLEVPSGALW  60
KVKLQNSNGM AWLKEGWNQF KEYYSIGFGY FLLFQYNGNS HFSVSIFDLS ASEIEYPSGP  120
SEDMTPENFV KIVGDASHIK KEVGPETNNN ACDDIVDDIL RKKIAKVTKV VDHSYSRRQK  180
SGVPEWQDPI RVNLEKPNVE EDLYCATDKE KRKEMKEKLE KQNMEKNLYH AADKGKEHCK  240
EELDPPASKM TNTSRCNKRK YSMSLEAPHC RHPLRSKSKP VEVVKLDQSK TEGTMHCVKP  300
KNTVVADSSH SGRQKTAAPI SCPETIEPKT KPEKGNLEED FDCAATKARR GETNKEKLQK  360
QDVQQNVHDI LLRSPHRAKS FLAEHCNEVP VVDPSASKMT TTDQQSEKKT TTNLDASCCR  420
YPLRSKQLKE VKLEKRDTEE DLFCAAQKAK KTETNRVKLV KGDAEEHCNE VPVVDPSAPK  480
MTTTNQHTEK KTAISLDVYP LRSKQLKDVM IEKRDLKEHC NEVSEVDLSA SKMTTTNRHR  540
EKKAAASLDA SWCRYPLRSK QLKDMNIEKR DLKEDCNEVS VVDLSASEMT STDRHTEKKT  600
ATSLDASWCR YPLRSKQLKD VKIEKRDVEG ILFSNKTIFL CEIHYIELFY DRWHSSFPPF  660
LPFFHVIFLA EHCNKLPVMD PSASEMTTTN QHSEKKTATS LDVSRCRYPL RSKQLKEVKL  720
EQWGGEKNMH NLKPKNKVVA DSPYCEKQNS GLLPSSPSFH PVKKEPIRVK REKPDVEEDL  780
FCAAQKAKMK VINNVKLEIG DVEGNLNSAA YKVKASEMTN TWQEKGYTLI DAQCSKLGNP  840
YFIVSMQPTH VSRNFLLNIP GNFFRRYFKE EEASVILRAS DGRTWRARCS FQSNCARIHS  900
PGWREFALDN GLKVHDTCVF ELMEGIELVL NVTIFRAG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A3e-1381593622141B3 domain-containing transcription factor VRN1
4i1k_B3e-1381593622141B3 domain-containing transcription factor VRN1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019240662.10.0PREDICTED: uncharacterized protein LOC109220660 isoform X2
TrEMBLA0A1S4C3750.0A0A1S4C375_TOBAC; uncharacterized protein LOC107814576 isoform X2
TrEMBLA0A1U7XZ370.0A0A1U7XZ37_NICSY; uncharacterized protein LOC104243691 isoform X2
STRINGXP_009797235.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA132901215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-20B3 family protein