PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06896g02005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family bHLH
Protein Properties Length: 283aa    MW: 31348.5 Da    PI: 7.3278
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06896g02005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.64.7e-1389136455
                               HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +h   Er RR+++++ f++L  llP++     +K +K++i+ +Av+YIk Lq
  Niben101Scf06896g02005.1  89 MHIWTERERRKKMRNMFSNLHALLPQL----PPKEDKSTIVDEAVNYIKTLQ 136
                               56678*********************6....39******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.99985135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.8E-1685153IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.64E-1488140No hitNo description
Gene3DG3DSA:4.10.280.102.1E-1488147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-1090136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-793141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550214.93E-6220269No hitNo description
Gene3DG3DSA:3.30.70.2603.7E-5221266No hitNo description
PROSITE profilePS516719.499224283IPR002912ACT domain
CDDcd048731.43E-5225263No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MDEGGEDCFI WENQGWGFLN SDNSGGNGAK SSGTKLPDTS QLAVSDSVAR EIEMEGPSAG  60
RKRTANRVKG NGEVNEGKVN GGGESDHEMH IWTERERRKK MRNMFSNLHA LLPQLPPKED  120
KSTIVDEAVN YIKTLQHTLQ KLQRQKLERL HGMETSMNPS IITSQKLSAE SIISREAFLA  180
DQCSTNNAVI SPTANPISMP HFPAVFQSWT SPNVILNVCG EEAHISVCCP KKPGLLSSIC  240
YVLQKHKIEV VSAQISSNDH RNMYMILAHK NKIEATMNLL HLS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009800782.10.0PREDICTED: transcription factor bHLH95-like
TrEMBLA0A1U7Y9I30.0A0A1U7Y9I3_NICSY; transcription factor bHLH95-like
STRINGXP_009800782.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA13242369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49770.12e-48bHLH family protein