PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06885g00003.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 96aa    MW: 11037.3 Da    PI: 7.6897
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06885g00003.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.41.9e-09753144
                              TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                              r++WT++  +l+ +a +q+ ++   +W  +ar +g g++  ++k ++
  Niben101Scf06885g00003.1  7 RNSWTPQQNKLFERALAQFDKDtpdRWQNVARAVGGGKSVDEVKRHY 53
                              789*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.31561IPR017884SANT domain
SMARTSM007171.0E-7659IPR001005SANT/Myb domain
PfamPF002495.6E-7753IPR001005SANT/Myb domain
SuperFamilySSF466893.67E-12864IPR009057Homeodomain-like
CDDcd001675.09E-5953No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASNSIRNSW TPQQNKLFER ALAQFDKDTP DRWQNVARAV GGGKSVDEVK RHYEILIEDL  60
RRIESDLVPL PTYRNGGTTG VAADEEQRLL RYLNLH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-2610951192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009779120.11e-65PREDICTED: protein RADIALIS-like 4
RefseqXP_016470681.11e-65PREDICTED: protein RADIALIS-like 4
SwissprotQ1A1735e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A1S4A2853e-64A0A1S4A285_TOBAC; protein RADIALIS-like 4
TrEMBLA0A1U7WY033e-64A0A1U7WY03_NICSY; protein RADIALIS-like 4
STRINGXP_009779120.16e-65(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.11e-31RAD-like 6