PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06860g00001.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 346aa MW: 39208.5 Da PI: 5.1333

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06860g00001.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.1	2.4e-11	180	223	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+++L Niben101Scf06860g00001.1 180 LMAERRRRKRLNDRLSMLRSVVPKiS------KMDRTSILGDTIDYMREL 223 589*******************66......*************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.364	174	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.07E-15	177	244	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.0E-9	180	223	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.9E-12	180	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.30E-4	181	227	No hit	No description
Gene3D	G3DSA:4.10.280.10	2.8E-15	181	236	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	9.96E-5	272	309	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 346 aa Download sequence Send to blast
MFLLLYISLQ LHFIKIHTLQ NCSGFFKKST KSNMEYYNEN GFLEELLSSW DTSTTLVPME 60 MPDFYNNESS NFFDHIATTT TTTSNSFEDY SYDLPFDHSL INSSFYSPFG DELSPPHLTD 120 NTSSFPNSHE DFNSLLEMGN NAPCKLEQIQ VSEAPCFNIG LCPERKTKSK KLDGQPSKNL 180 MAERRRRKRL NDRLSMLRSV VPKISKMDRT SILGDTIDYM RELLERINTM QEEMDLGPNQ 240 LSLLSIFKDV KPNEMLARNS PKFDVERRGA DTKVEICCAG KPGLLLSTVT TLEALGLDIQ 300 QCVISSFSDL SMQASCSEKM EQRGLVNSEG IKQALFRNAG YGGMCL

Sequence ? help Back to Top

Protein Sequence Length: 346 aa Download sequence Send to blast

MFLLLYISLQ LHFIKIHTLQ NCSGFFKKST KSNMEYYNEN GFLEELLSSW DTSTTLVPME  60
MPDFYNNESS NFFDHIATTT TTTSNSFEDY SYDLPFDHSL INSSFYSPFG DELSPPHLTD  120
NTSSFPNSHE DFNSLLEMGN NAPCKLEQIQ VSEAPCFNIG LCPERKTKSK KLDGQPSKNL  180
MAERRRRKRL NDRLSMLRSV VPKISKMDRT SILGDTIDYM RELLERINTM QEEMDLGPNQ  240
LSLLSIFKDV KPNEMLARNS PKFDVERRGA DTKVEICCAG KPGLLLSTVT TLEALGLDIQ  300
QCVISSFSDL SMQASCSEKM EQRGLVNSEG IKQALFRNAG YGGMCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	182	189	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019257273.1	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	3e-81	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A1J6IM25	0.0	A0A1J6IM25_NICAT; Transcription factor bhlh93
STRING	XP_009623441.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA789	24	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	3e-83	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]