PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06848g08006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 194aa MW: 21963.7 Da PI: 5.346 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.3 | 9e-19 | 13 | 62 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 y+GVr +k +g+Wv+eIr+p gk++r++lg++ t+e+Aa+a++ a+ l+ge Niben101Scf06848g08006.1 13 YRGVRKRK-WGKWVSEIREP---GKKTRIWLGSYETPEMAAAAYDVAAFHLKGE 62 9****999.**********8...557***********************99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.1E-32 | 12 | 70 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.09 | 12 | 69 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-22 | 12 | 70 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 8.0E-36 | 12 | 75 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.31E-22 | 13 | 71 | No hit | No description |
PRINTS | PR00367 | 1.1E-12 | 13 | 24 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.3E-12 | 13 | 62 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-12 | 51 | 71 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 194 aa Download sequence Send to blast |
MEDHQQSSNI HTYRGVRKRK WGKWVSEIRE PGKKTRIWLG SYETPEMAAA AYDVAAFHLK 60 GERARLNFPE LIDSFPKPSS SKPEDVQMAA HEAAMRFKRQ TPEPPESGGC GGGGTVVPVR 120 VGLSSSQIQA INESPLDSPK MWMELAGALL LRDPVREYTY PSYSFTDPMV LCEDIAEFGE 180 WDEMQQNHDS IWNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 1e-18 | 13 | 74 | 6 | 68 | ATERF1 |
3gcc_A | 1e-18 | 13 | 74 | 6 | 68 | ATERF1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016502765.1 | 1e-113 | PREDICTED: ethylene-responsive transcription factor ERF022-like | ||||
TrEMBL | A0A1S4CNX5 | 1e-112 | A0A1S4CNX5_TOBAC; ethylene-responsive transcription factor ERF022-like | ||||
STRING | XP_009783971.1 | 1e-111 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71450.1 | 1e-48 | ERF family protein |