PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf06836g01010.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 247aa MW: 28080.6 Da PI: 5.7639 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 38.6 | 2.5e-12 | 2 | 33 | 12 | 45 |
HHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 12 lvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 lv+++kq G++ W+ Ia++++ gRt++ +k++w+ Niben101Scf06836g01010.1 2 LVEGHKQIGNK-WAEIAKRIP-GRTENAIKNHWN 33 89*********.*********.***********8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.402 | 1 | 40 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.6E-12 | 1 | 34 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0012 | 1 | 38 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.59E-8 | 1 | 36 | No hit | No description |
SuperFamily | SSF46689 | 1.56E-9 | 2 | 43 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 4.4E-10 | 2 | 33 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 247 aa Download sequence Send to blast |
MLVEGHKQIG NKWAEIAKRI PGRTENAIKN HWNATKRRQN SRRNKLKKQE KDGPNESKYR 60 SNILQDYIRS KYFSDDSRLT TTMTPMTNAT PPYSDDDSPS LLTSQTYDEE MNFMQNLFGR 120 NSLMENSGKV LDNNSSSSSY GFNSFGFNYS NNDNQTDNGQ DGSNLYLEPN MYMADDQSYH 180 CSDLYLSYLL DRTSTSAATS LPYSGSFRYG NMINQASSSS GGNNEVDLME MVSSSFYPQK 240 TSNNTFF |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_009619843.1 | 1e-143 | PREDICTED: transcription factor MYB108-like | ||||
Refseq | XP_009767834.1 | 1e-144 | PREDICTED: transcription factor MYB108-like | ||||
TrEMBL | A0A1J6IRQ3 | 1e-163 | A0A1J6IRQ3_NICAT; Transcription factor myb98 | ||||
STRING | XP_009767834.1 | 1e-143 | (Nicotiana sylvestris) | ||||
STRING | XP_009619843.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4825 | 19 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G58850.1 | 3e-29 | myb domain protein 119 |