PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06825g03006.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | MYB_related | ||||||||
Protein Properties | Length: 717aa MW: 82067.1 Da PI: 9.248 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23 | 1.9e-07 | 443 | 482 | 3 | 45 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 +WT+eE e + +k++G++ Wk a ++g + + ++k+ w+ Niben101Scf06825g03006.1 443 KWTEEEYEMVRNFHKEHGNN-WKVLADELG--KHRFHVKDTWR 482 8*****************99.********9..56777887776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.9E-4 | 367 | 438 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.3E-4 | 370 | 457 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.15 | 440 | 487 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.49E-8 | 442 | 502 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00423 | 443 | 472 | No hit | No description |
PROSITE profile | PS50090 | 7.085 | 443 | 485 | IPR017877 | Myb-like domain |
Pfam | PF13921 | 1.3E-9 | 444 | 502 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.9E-7 | 458 | 497 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.851 | 486 | 554 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.21 | 490 | 556 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.4E-8 | 498 | 573 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.25E-5 | 534 | 609 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 7.538 | 556 | 609 | IPR017877 | Myb-like domain |
SMART | SM00717 | 14 | 560 | 611 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.20.1250.20 | 5.2E-5 | 660 | 707 | No hit | No description |
CDD | cd06174 | 5.17E-5 | 662 | 716 | IPR020846 | Major facilitator superfamily domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 717 aa Download sequence Send to blast |
MVIGDEKLDM LPKKEKKSKK SNKNAATSGP GVVVADIKML GGDFSFEVEK LSVVETKKER 60 NNAKPATKTI GESDDCDIKK KKKKKKKRER ECATHPGKST EDSDKDVAIS VEKKKPNKLK 120 RSHQDERELI LDAPLDTKTT AHVSANETRD NKKVVETLNE VSGGDVVEEI RRKKKSKKSN 180 NNAPTTDVVL PNSDVRAVEG DLSLEEEKLC VMKTKEKKDK VNKETKAARE SEDCDAKRKK 240 GKKGRTFKDN AEAALKNVEE KKSKKLKKSC RDELERMHDI EDGQGDIVTE LNQGDISSTV 300 EEMEEQSRTD TGNIRKRKKA MLGHSSEDPT HEKSEKRVRF SGHVQIFPSS GDPSGENHET 360 VEENLLRGKR FSKLEDEIVK EAVHKYIDIH NLGEEGLQKI LNSRSNPEVK GCWKEIGSSI 420 PYRPYIAVYY RAQVLFRRSE TRKWTEEEYE MVRNFHKEHG NNWKVLADEL GKHRFHVKDT 480 WRRIKLANKK KGQWSQEEYQ TLFDLVNTDL KLKLSEEKKS KHGMLRDNIA WGAISDKLST 540 RTDATCCLKW YDQLTSPMVA KGEWADADDY RLVDALFELD ASCIDDVDWD NLLDHRPGEI 600 CRKRWNQMVL HIGQHGNRSF AEQVEVLAKR YRPELVEVRE AWDSKPVIPF DLHLHFRLLH 660 RAGGLLSTFF YGYACSQVPG GWSAQKIGGR HVLLSFLLWS LTCAFVSLDP NRSMVLK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 79 | 87 | KKKKKKKKR |
2 | 81 | 87 | KKKKKKR |
3 | 314 | 318 | RKRKK |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019230671.1 | 0.0 | PREDICTED: transcription termination factor 1-like | ||||
TrEMBL | A0A314KJ03 | 0.0 | A0A314KJ03_NICAT; Uncharacterized protein | ||||
STRING | XP_009760244.1 | 0.0 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1029 | 14 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41020.1 | 1e-125 | MYB_related family protein |