PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06825g03006.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 717aa    MW: 82067.1 Da    PI: 9.248
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06825g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding231.9e-07443482345
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               +WT+eE e   + +k++G++ Wk  a ++g  + + ++k+ w+
  Niben101Scf06825g03006.1 443 KWTEEEYEMVRNFHKEHGNN-WKVLADELG--KHRFHVKDTWR 482
                               8*****************99.********9..56777887776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007172.9E-4367438IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-4370457IPR009057Homeodomain-like
SMARTSM007170.15440487IPR001005SANT/Myb domain
SuperFamilySSF466894.49E-8442502IPR009057Homeodomain-like
CDDcd001670.00423443472No hitNo description
PROSITE profilePS500907.085443485IPR017877Myb-like domain
PfamPF139211.3E-9444502No hitNo description
Gene3DG3DSA:1.10.10.601.9E-7458497IPR009057Homeodomain-like
PROSITE profilePS500907.851486554IPR017877Myb-like domain
SMARTSM007170.21490556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-8498573IPR009057Homeodomain-like
SuperFamilySSF466893.25E-5534609IPR009057Homeodomain-like
PROSITE profilePS500907.538556609IPR017877Myb-like domain
SMARTSM0071714560611IPR001005SANT/Myb domain
Gene3DG3DSA:1.20.1250.205.2E-5660707No hitNo description
CDDcd061745.17E-5662716IPR020846Major facilitator superfamily domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 717 aa     Download sequence    Send to blast
MVIGDEKLDM LPKKEKKSKK SNKNAATSGP GVVVADIKML GGDFSFEVEK LSVVETKKER  60
NNAKPATKTI GESDDCDIKK KKKKKKKRER ECATHPGKST EDSDKDVAIS VEKKKPNKLK  120
RSHQDERELI LDAPLDTKTT AHVSANETRD NKKVVETLNE VSGGDVVEEI RRKKKSKKSN  180
NNAPTTDVVL PNSDVRAVEG DLSLEEEKLC VMKTKEKKDK VNKETKAARE SEDCDAKRKK  240
GKKGRTFKDN AEAALKNVEE KKSKKLKKSC RDELERMHDI EDGQGDIVTE LNQGDISSTV  300
EEMEEQSRTD TGNIRKRKKA MLGHSSEDPT HEKSEKRVRF SGHVQIFPSS GDPSGENHET  360
VEENLLRGKR FSKLEDEIVK EAVHKYIDIH NLGEEGLQKI LNSRSNPEVK GCWKEIGSSI  420
PYRPYIAVYY RAQVLFRRSE TRKWTEEEYE MVRNFHKEHG NNWKVLADEL GKHRFHVKDT  480
WRRIKLANKK KGQWSQEEYQ TLFDLVNTDL KLKLSEEKKS KHGMLRDNIA WGAISDKLST  540
RTDATCCLKW YDQLTSPMVA KGEWADADDY RLVDALFELD ASCIDDVDWD NLLDHRPGEI  600
CRKRWNQMVL HIGQHGNRSF AEQVEVLAKR YRPELVEVRE AWDSKPVIPF DLHLHFRLLH  660
RAGGLLSTFF YGYACSQVPG GWSAQKIGGR HVLLSFLLWS LTCAFVSLDP NRSMVLK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17987KKKKKKKKR
28187KKKKKKR
3314318RKRKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019230671.10.0PREDICTED: transcription termination factor 1-like
TrEMBLA0A314KJ030.0A0A314KJ03_NICAT; Uncharacterized protein
STRINGXP_009760244.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10291429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41020.11e-125MYB_related family protein