PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06795g03005.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 339aa    MW: 38666.5 Da    PI: 7.8694
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06795g03005.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding316e-101451148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              +g+WT+eEd++l+ +++++G g          ++R++k+c++rw +yl
  Niben101Scf06795g03005.1 14 KGPWTPEEDQKLLSCIEEHGCG----------LHRCGKSCRLRWINYL 51
                              79******************99..........79************97 PP
2Myb_DNA-binding47.73.6e-1557100146
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                               rg+++ +E+  +++++++lG++ W++Ia++++  Rt++++k++w++
  Niben101Scf06795g03005.1  57 RGKFSLQEERTIIQLHALLGNR-WSAIAAYLP-SRTDNEIKNYWNS 100
                               89********************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-16554IPR009057Homeodomain-like
PROSITE profilePS5129412.283951IPR017930Myb domain
SuperFamilySSF466893.14E-261198IPR009057Homeodomain-like
SMARTSM007171.1E-61353IPR001005SANT/Myb domain
PfamPF002491.3E-81451IPR001005SANT/Myb domain
PROSITE profilePS5129424.27152106IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2555106IPR009057Homeodomain-like
SMARTSM007172.3E-1556104IPR001005SANT/Myb domain
PfamPF002491.2E-1457100IPR001005SANT/Myb domain
CDDcd001672.32E-1059102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MGRSKCCDKE GLKKGPWTPE EDQKLLSCIE EHGCGLHRCG KSCRLRWINY LRPDIKRGKF  60
SLQEERTIIQ LHALLGNRWS AIAAYLPSRT DNEIKNYWNS RLKKRLTKMG IDPMTHKPKI  120
TNNIDGSSND QCKYVANLSH MAEWESARLE AEARLVRRSK DHSKFLLNNT RNNNNNNNNN  180
YVVSQPYYQL PCLDILKAWQ RASTKLPTTN DISSIVLDGF ANKNLESSIP STLNSSGNLF  240
MSNVSTTTEV GDQNLPLSTI TCLENPCPTK DVQTDLPSFM QEFSELLDHA EYTQNSANNF  300
TGVQMDNYMG SCYGDFEDNR FNWNNFHYLV TSPIGSPVF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-26121065108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009621431.10.0PREDICTED: protein ODORANT1-like
SwissprotQ9LE635e-85MY106_ARATH; Transcription factor MYB106
TrEMBLA0A1S4ACH70.0A0A1S4ACH7_TOBAC; protein ODORANT1-like
TrEMBLA0A1U7XKL30.0A0A1U7XKL3_NICSY; protein ODORANT1-like
STRINGXP_009621431.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15310.11e-72myb domain protein 16