PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Niben101Scf06761g00018.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
|
||||||||
Family | TALE | ||||||||
Protein Properties | Length: 424aa MW: 46837.9 Da PI: 5.8261 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 23.7 | 8.4e-08 | 373 | 406 | 21 | 54 |
HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 21 knrypsaeereeLAkklgLterqVkvWFqNrRak 54 k +yp++e++++L +++gL+ +q+ +WF N+R + Niben101Scf06761g00018.1 373 KWPYPTEEDKAKLVQETGLQLKQINNWFINQRKR 406 569*****************************87 PP | |||||||
2 | ELK | 27.7 | 6.3e-10 | 327 | 348 | 1 | 22 |
ELK 1 ELKhqLlrKYsgyLgsLkqEFs 22 ELKh+L+++Y+++L+++++E++ Niben101Scf06761g00018.1 327 ELKHELKQGYKEKLVDIREEIL 348 9*******************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01255 | 4.2E-18 | 165 | 209 | IPR005540 | KNOX1 |
Pfam | PF03790 | 6.3E-17 | 167 | 208 | IPR005540 | KNOX1 |
SMART | SM01256 | 4.0E-28 | 217 | 272 | IPR005541 | KNOX2 |
Pfam | PF03791 | 1.4E-20 | 221 | 271 | IPR005541 | KNOX2 |
PROSITE profile | PS51213 | 10.144 | 327 | 347 | IPR005539 | ELK domain |
SMART | SM01188 | 9.2E-4 | 327 | 348 | IPR005539 | ELK domain |
Pfam | PF03789 | 2.2E-6 | 327 | 348 | IPR005539 | ELK domain |
PROSITE profile | PS50071 | 11.742 | 347 | 410 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 4.28E-16 | 349 | 413 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 1.8E-11 | 349 | 414 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.90E-12 | 350 | 411 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-25 | 354 | 411 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 1.0E-17 | 367 | 406 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009416 | Biological Process | response to light stimulus | ||||
GO:0009722 | Biological Process | detection of cytokinin stimulus | ||||
GO:0071345 | Biological Process | cellular response to cytokine stimulus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 424 aa Download sequence Send to blast |
MAYNPNHMSQ EMDMHHFSDE NSAVLRSILP EQLAQSSPDV KPLDHQQPAT WLNSAILRQE 60 SHYTSTGGCG AGENFLNLHS NSESSAAASQ ASNQWLSRSI LQRNVSDVQT SNNSSAVMAA 120 VDLKNDDGNN NNDSGNNAAA GQLTDSKVVG GGGGGTDGIL NWQNAGYKAE ILAHPLFEQL 180 LSAHVACLRI ATPVDQLPRI DAQLAQSQQV VAKYSSLGQN IGDDKELDQF LTHYVLLLCS 240 FKEQLQQHVR VHAMEAVMAC WEIEQSLQSL TGVSPGEGTG ATMSDDEDDQ VDSEANLFDG 300 SLVGHDGMGF GLPTESERSL MERVRQELKH ELKQGYKEKL VDIREEILRK RRAGKLPGDT 360 TSVLKAWWQS HAKWPYPTEE DKAKLVQETG LQLKQINNWF INQRKRNWHS NPSSSTTSKS 420 KHKR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1x2n_A | 7e-13 | 350 | 414 | 8 | 72 | Homeobox protein PKNOX1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_019248511.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X1 | ||||
Refseq | XP_019248514.1 | 0.0 | PREDICTED: homeobox protein knotted-1-like 3 isoform X2 | ||||
Swissprot | P48000 | 0.0 | KNAT3_ARATH; Homeobox protein knotted-1-like 3 | ||||
TrEMBL | A0A1J6IVC5 | 0.0 | A0A1J6IVC5_NICAT; Homeobox protein knotted-1-like 3 | ||||
STRING | XP_009618001.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1432 | 24 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G25220.2 | 1e-176 | KNOTTED1-like homeobox gene 3 |
Publications ? help Back to Top | |||
---|---|---|---|
|