PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06736g08010.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB
Protein Properties Length: 358aa    MW: 40437.5 Da    PI: 7.519
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06736g08010.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.2e-171360148
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                              rg W++eEde+l++ ++ +G+ +W+++++  g+ R++k+c++rw +yl
  Niben101Scf06736g08010.1 13 RGLWSPEEDEKLIRHITTHGNSCWSSVPKLAGLQRCGKSCRLRWINYL 60
                              788*******************************************97 PP
2Myb_DNA-binding51.23e-1666108145
                               TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
           Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                               rg ++++E++ ++d+++ lG++ W+ Ia++++ gRt++++k++w+
  Niben101Scf06736g08010.1  66 RGCFSEQEEKTIIDVHRILGNR-WAQIAKHLP-GRTDNEVKNFWN 108
                               899*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-25463IPR009057Homeodomain-like
PROSITE profilePS5129416.961860IPR017930Myb domain
SuperFamilySSF466892.55E-2710107IPR009057Homeodomain-like
SMARTSM007171.8E-121262IPR001005SANT/Myb domain
PfamPF002492.3E-151360IPR001005SANT/Myb domain
CDDcd001672.54E-101660No hitNo description
PROSITE profilePS5129424.74261115IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.2E-2464116IPR009057Homeodomain-like
SMARTSM007175.8E-1565113IPR001005SANT/Myb domain
PfamPF002495.4E-1566109IPR001005SANT/Myb domain
CDDcd001671.39E-1069108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MGHHCCSKQK VKRGLWSPEE DEKLIRHITT HGNSCWSSVP KLAGLQRCGK SCRLRWINYL  60
RPDLKRGCFS EQEEKTIIDV HRILGNRWAQ IAKHLPGRTD NEVKNFWNSA IKKKLIAQGF  120
DPNTHNLLSR NHHQNNKIKS SCKSKTSTHP NSTSVFTIET LSSSKHVGVI SMDIIKASLA  180
ALPPIATTTT ITIPQSQTSW GRLYESSLTS TTYNYMNPIR VPTTTNIENS NLATIEYQNQ  240
STSDSLLSSS LTPSMFGTIN ENCMWDVTGF QPQLIGPSNG EEKMQLVQHE GAQVLQLQEN  300
ICQEEVYKVN HEFNNNGQIS ENVTFDNSNF DFEFVNSALM PCEIYTNVNS IDQLAWDC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29131157108B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009622248.10.0PREDICTED: transcription factor MYB86-like
RefseqXP_009781591.10.0PREDICTED: myb-related protein 330-like
RefseqXP_016470040.10.0PREDICTED: transcription factor MYB86-like
TrEMBLA0A1S4A0C30.0A0A1S4A0C3_TOBAC; transcription factor MYB86-like
TrEMBLA0A1U7WWA60.0A0A1U7WWA6_NICSY; myb-related protein 330-like
STRINGXP_009781591.10.0(Nicotiana sylvestris)
STRINGXP_009622248.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12720.14e-80myb domain protein 67