PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06662g01011.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 464aa    MW: 53074.7 Da    PI: 7.4596
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06662g01011.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000581638123
                              EEETTTTEEESSHHHHHHHHHHT CS
                   zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                              + C  C++ Fs++  L  H+r H
  Niben101Scf06662g01011.1 16 HYCRVCKRGFSSSGALGGHMRYH 38
                              68*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.4321638IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-71638No hitNo description
SMARTSM003550.081638IPR015880Zinc finger, C2H2-like
PfamPF139120.0041638IPR007087Zinc finger, C2H2
PROSITE patternPS0002801838IPR007087Zinc finger, C2H2
SuperFamilySSF576672.25E-7174201No hitNo description
PROSITE profilePS501579.91179206IPR007087Zinc finger, C2H2
SMARTSM003550.4179201IPR015880Zinc finger, C2H2-like
PfamPF139128.6E-8179203IPR007087Zinc finger, C2H2
PROSITE patternPS000280181201IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-6261285No hitNo description
PfamPF139127.3E-12262286IPR007087Zinc finger, C2H2
PROSITE profilePS501579.619263285IPR007087Zinc finger, C2H2
SMARTSM003550.34263285IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280265285IPR007087Zinc finger, C2H2
SuperFamilySSF576672.24E-6371398No hitNo description
PROSITE profilePS501579.058376398IPR007087Zinc finger, C2H2
SMARTSM003550.25376398IPR015880Zinc finger, C2H2-like
PfamPF139128.7E-11377399IPR007087Zinc finger, C2H2
PROSITE patternPS000280378398IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 464 aa     Download sequence    Send to blast
MADNSEKNET ISSVLHYCRV CKRGFSSSGA LGGHMRYHGV GDTSRNYGEE INKQRFMINN  60
FRRDNNKQEG QKHSYNLRAN SNPLFGNRAS ENRDSKSSMW PPNDLSSHGS LDIERNTQLY  120
NAKSKYYGHD KNQYGSREED GDEDEDLANC LVMLLIKSYD SDKNKETKNK EKEIEKGMFQ  180
CKSCKKIFNS HQALGGHRAS HKKVKGCYAA KLDDNNNNNY NDTDIDEDFI PPTDLILHQE  240
SNSFQSHSPS SSSSFSRKRS RVHQCSICHR SFSSGQALGG HKRCHWLTSC LPETTFIPTF  300
QEIQNHNQEQ LFNKAMFTNS DQPLDLNFPA QLVNAAELWI DQEVDTNNLN LSLNKKSKDS  360
TEDLSREEII RLRKQIQCSI CHRVFSSGQA LGGHKRCHWL TSSFPETTFI PTFQEIKYHN  420
QEQLFNKPMF TNSDQSLDLN FPAKLVNAAE VGQKLHNPFE HEGP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016463486.10.0PREDICTED: zinc finger protein ZAT9-like
TrEMBLA0A1S3ZGS10.0A0A1S3ZGS1_TOBAC; zinc finger protein ZAT9-like
STRINGXP_009780218.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17180.15e-19C2H2-like zinc finger protein