PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06662g01002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | C2H2 | ||||||||
Protein Properties | Length: 125aa MW: 14357.8 Da PI: 4.7404 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00038 | 74 | 96 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F+++ L H +H Niben101Scf06662g01002.1 74 FQCKACKKIFNSHQALGEHRASH 96 89*****************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.05E-5 | 71 | 100 | No hit | No description |
PROSITE profile | PS50157 | 10.18 | 74 | 101 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-7 | 74 | 98 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 76 | 96 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MVDNSEKNET ISSVLHYCRY YGYDKDQYGS REEDGEEDED LANCLVMLLN KSYDLSDNNK 60 ETKNKAKEIE KGMFQCKACK KIFNSHQALG EHRASHKKVK GCYAAKLDDN NNNTDIDEDF 120 ISPTD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Mediates the regulation of male germ cell division by DUO1. {ECO:0000269|PubMed:24876252}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Activated by the transcription factor DUO1. {ECO:0000269|PubMed:21285328}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016489071.1 | 2e-49 | PREDICTED: zinc finger protein ZAT1-like | ||||
Refseq | XP_018623628.1 | 2e-49 | PREDICTED: zinc finger protein ZAT1-like | ||||
Swissprot | O65499 | 5e-14 | ZAT3_ARATH; Zinc finger protein ZAT3 | ||||
TrEMBL | A0A1S4BJK9 | 4e-48 | A0A1S4BJK9_TOBAC; zinc finger protein ZAT1-like | ||||
STRING | XP_009591198.1 | 6e-49 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 1e-14 | C2H2-like zinc finger protein |