PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06661g03006.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C3H
Protein Properties Length: 293aa    MW: 30670.8 Da    PI: 9.7273
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06661g03006.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.51.7e-063659225
                              -S---SGGGGTS--TTTTT-SS-S CS
                   zf-CCCH  2 ktelCrffartGtCkyGdrCkFaH 25
                              k ++C  f+ t  C++G++C+F H
  Niben101Scf06661g03006.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59
                              7789******************** PP
2zf-CCCH25.32.6e-0897121226
                               -S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                               kt+lC+ f     Ck+Gd+C+FaHg
  Niben101Scf06661g03006.1  97 KTKLCNKFNSAEGCKFGDKCHFAHG 121
                               89**********************9 PP
3zf-CCCH37.44.4e-12260284126
                               --S---SGGGGTS--TTTTT-SS-SS CS
                   zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                               ykt+lC +fa+ G C +G+rC+FaHg
  Niben101Scf06661g03006.1 260 YKTKLCENFAK-GSCTFGERCHFAHG 284
                               9**********.*************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.913461IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.7093462IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.67E-63560IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.8E-83659IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-43659IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-1393125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.11E-894125IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-495122IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.64895123IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-697121IPR000571Zinc finger, CCCH-type
SuperFamilySSF547915.99E-15161236IPR004088K Homology domain, type 1
SMARTSM003221.6E-12165235IPR004087K Homology domain
PROSITE profilePS5008414.718166230IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.104.2E-16167235IPR004088K Homology domain, type 1
CDDcd001052.60E-14168230No hitNo description
PfamPF000138.7E-12168232IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.101.2E-16254290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.8E-9257289IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-7259285IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.746259286IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9260284IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDLRKRNRNE SGFNANGGFK KAKSEMDSLS SGIGSKSKPC TKFFSTAGCP FGESCHFLHY  60
VPGGYNAVAQ MMNMAPSPAS RNAAAAPMPN GNTPAVKTKL CNKFNSAEGC KFGDKCHFAH  120
GDWEIGKPIA PSQEDPRAMG GGPVPGRFGG RMEPPISGPA ASFGTSATAK ISVDASLAGA  180
IIGKGGVNSK QICRQTGAKL AIREHETDKN LRNIELEGTF EQISQASAMV RELISSLGSV  240
GGPGRAPAVQ GGPPPQMSNY KTKLCENFAK GSCTFGERCH FAHGAAELRK TGV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00113ampDAPTransfer from AT3G12130Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019245694.10.0PREDICTED: zinc finger CCCH domain-containing protein 14-like
SwissprotQ7F8R01e-108C3H14_ORYSJ; Zinc finger CCCH domain-containing protein 14
TrEMBLA0A1J6IEQ90.0A0A1J6IEQ9_NICAT; Zinc finger ccch domain-containing protein 14
STRINGXP_009780696.10.0(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8452498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06770.12e-65C3H family protein