PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06621g02032.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | ERF | ||||||||
Protein Properties | Length: 213aa MW: 24345.7 Da PI: 7.7535 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2.1e-19 | 12 | 61 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f tae Aa a+++a+++++g Niben101Scf06621g02032.1 12 RYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFETAEAAAVAYDEAALRFKG 61 8********.**********94....45************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.72E-22 | 11 | 70 | No hit | No description |
SuperFamily | SSF54171 | 4.77E-22 | 12 | 70 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.3E-12 | 12 | 61 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.08 | 12 | 69 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 6.3E-37 | 12 | 75 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-33 | 12 | 70 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 13 | 24 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.7E-11 | 35 | 51 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MHICEGNSRR KRYRGVRQRP WGKWAAEIRD PKKAARVWLG TFETAEAAAV AYDEAALRFK 60 GNKAKLNFPE KVQGKFQYLT TTITSQDHHS PNNIVQQQYI PITNSNNNHP LPFQEHYPSL 120 HHYAQLLQND SNTTDLNFGT TPSYYQQSSG SGSFDFAQSS SNSTLSELPA SKLQSSYKQE 180 EEVFMRFPSH FDTSSSSCGP HESNWEEFED RKS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-26 | 11 | 72 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_016504834.1 | 1e-118 | PREDICTED: ethylene-responsive transcription factor ERF113-like isoform X1 | ||||
TrEMBL | A0A1S4CV08 | 1e-117 | A0A1S4CV08_TOBAC; ethylene-responsive transcription factor ERF113-like isoform X1 | ||||
STRING | XP_009587768.1 | 1e-117 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA21 | 24 | 1165 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 1e-30 | related to AP2 6l |