PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06621g02016.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | Trihelix | ||||||||
Protein Properties | Length: 181aa MW: 20478.4 Da PI: 4.5385 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 54.5 | 3e-17 | 36 | 105 | 19 | 82 |
trihelix 19 erlrrgk......lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 +r r+++ + +p+W +vs+++r+rg +r+p+qC+++w+n+ +++kik++e++ + s+s + + Niben101Scf06621g02016.1 36 HRGRKSSsvigsdKPEPKWNSVSSYCRQRGANRGPVQCRKRWSNMISDFRKIKAWESQTNGSSESYWIMN 105 4444432333333889*****************************************9755555566555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.5E-10 | 40 | 104 | No hit | No description |
SuperFamily | SSF46689 | 8.21E-5 | 52 | 86 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MNENTTSLAG MVDGQQKPTE VTDDKKGKKI AEERTHRGRK SSSVIGSDKP EPKWNSVSSY 60 CRQRGANRGP VQCRKRWSNM ISDFRKIKAW ESQTNGSSES YWIMNDKVDY GIETEEEEEE 120 EENEEENTEA EAISHTDEYI MADDVMFPAM EEIGSNPLKE GTAKDKKAKS IPSPTPISDS 180 Y |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009773262.1 | 3e-91 | PREDICTED: trihelix transcription factor GT-2-like | ||||
Refseq | XP_016502485.1 | 3e-91 | PREDICTED: trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1S4CN58 | 8e-90 | A0A1S4CN58_TOBAC; trihelix transcription factor ASR3-like | ||||
TrEMBL | A0A1U7VZR6 | 8e-90 | A0A1U7VZR6_NICSY; trihelix transcription factor GT-2-like | ||||
STRING | XP_009773262.1 | 1e-90 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1786 | 24 | 60 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-32 | Trihelix family protein |