PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Niben101Scf06596g03021.1

Organism

Nicotiana benthamiana

Taxonomic ID

4100

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

ERF

Protein Properties

Length: 239aa MW: 26352.4 Da PI: 6.0821

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Niben101Scf06596g03021.1	genome	BTI	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.5	1.6e-18	41	91	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++ykGVr ++ +g+Wv+eIr p ++++r++lg++ tae Aa+a++aa ++l+g Niben101Scf06596g03021.1 41 KKYKGVRMRS-WGSWVSEIRAP---NQKTRIWLGSYSTAEAAARAYDAALLCLKG 91 59***998.******9...336***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	22.023	42	101	IPR001471	AP2/ERF domain
SMART	SM00380	2.9E-34	42	105	IPR001471	AP2/ERF domain
Pfam	PF00847	1.6E-11	42	91	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.3E-28	42	98	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.11E-18	42	99	IPR016177	DNA-binding domain
PRINTS	PR00367	5.7E-9	43	54	IPR001471	AP2/ERF domain
CDD	cd00018	1.60E-14	45	101	No hit	No description
PRINTS	PR00367	5.7E-9	65	81	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009751	Biological Process	response to salicylic acid
GO:0009753	Biological Process	response to jasmonic acid
GO:0034605	Biological Process	cellular response to heat
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0071497	Biological Process	cellular response to freezing
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MVMKAEQKTL AAEASKSIMA LSSSSSSNNN NTNNNMKMKK KKYKGVRMRS WGSWVSEIRA 60 PNQKTRIWLG SYSTAEAAAR AYDAALLCLK GPSAATNLNF PFNSSFYHHI DLDHHTSTTL 120 SPKAIQRVAA AAASAAEGAG VNVENNVPSP PLSSTSTSTN SSSPLSHEDQ LDEVFLLPIF 180 DHHTLLEEET TVSLMGQWYN FDSPKYNDML HGTVYFDPPL MEEVYYEEGS ADIPLWSFC

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:21069430, ECO:0000269\|PubMed:27137403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00156	DAP	Transfer from AT1G21910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269\|PubMed:21069430}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009781193.1	1e-114	PREDICTED: ethylene-responsive transcription factor ERF014-like
Refseq	XP_016504621.1	1e-114	PREDICTED: ethylene-responsive transcription factor ERF014-like
Swissprot	Q9SFE4	7e-45	ERF12_ARATH; Ethylene-responsive transcription factor ERF012
TrEMBL	A0A1S4CU26	1e-113	A0A1S4CU26_TOBAC; ethylene-responsive transcription factor ERF014-like
TrEMBL	A0A1U7WRI2	1e-113	A0A1U7WRI2_NICSY; ethylene-responsive transcription factor ERF014-like
STRING	XP_009781193.1	1e-114	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6177	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21910.1	2e-32	ERF family protein

Publications ? help Back to Top
Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology. Plant Signal Behav, 2014. 9(3): p. e28211 [PMID:24614501] Kazama D, et al. Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis. Plants (Basel), 2013. 2(4): p. 769-85 [PMID:27137403]