PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Niben101Scf06590g02002.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
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Family | WOX | ||||||||
Protein Properties | Length: 181aa MW: 20823.2 Da PI: 9.2638 | ||||||||
Description | WOX family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.7 | 4.9e-19 | 5 | 64 | 3 | 57 |
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eql +L+e+++k +p+a++ e+ +++l ++++++V++WFqN++a+ekk Niben101Scf06590g02002.1 5 TRWSPTQEQLMILQEMYRKgLTNPNAAQLERVTDHLslfgKIETKNVFYWFQNHKAREKK 64 8*****************99***************************************8 PP | |||||||
2 | Wus_type_Homeobox | 104.3 | 7.8e-34 | 4 | 65 | 3 | 64 |
Wus_type_Homeobox 3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64 +tRW+Pt+eQ++iL+e+y++Gl +Pn+++++r+t +L+ +Gkie kNVfyWFQN+kaRe++k Niben101Scf06590g02002.1 4 HTRWSPTQEQLMILQEMYRKGLTNPNAAQLERVTDHLSLFGKIETKNVFYWFQNHKAREKKK 65 69**********************************************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 10.43 | 1 | 65 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.0E-7 | 2 | 69 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.58E-10 | 4 | 71 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.2E-7 | 5 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00046 | 1.5E-16 | 5 | 64 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.66E-5 | 5 | 62 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 181 aa Download sequence Send to blast |
MTGHTRWSPT QEQLMILQEM YRKGLTNPNA AQLERVTDHL SLFGKIETKN VFYWFQNHKA 60 REKKKLKKKF LMQMNQQQQM SINNDLNLPL FTSSTRLMAE VEDASTRLMN SLWNMNPPVP 120 NTCDMETCMM RAQGPHFILM MDIVPNPTSL PCISSNTPLK TLELFPVTAS SSLKDLAKEV 180 S |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009766251.1 | 1e-101 | PREDICTED: WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A1U7VMR2 | 1e-100 | A0A1U7VMR2_NICSY; WUSCHEL-related homeobox 3-like | ||||
TrEMBL | A0A2S1B7G4 | 1e-100 | A0A2S1B7G4_TOBAC; WOX3d | ||||
STRING | XP_009766251.1 | 1e-101 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2959 | 19 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28610.1 | 8e-27 | WOX family protein |