PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Niben101Scf06560g00001.1
Organism
Nicotiana benthamiana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 202aa    MW: 23425.4 Da    PI: 9.5683
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Niben101Scf06560g00001.1genomeBTI-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.91.8e-162266147
                              TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
           Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                              rg  T++E+ +++++++++G++ W+tIar+++ gRt++++k++w+++
  Niben101Scf06560g00001.1 22 RGHITPQEEGIIIELHALWGNK-WSTIARYLP-GRTDNEIKNYWRTH 66
                              6778******************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.295116IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.6E-10228IPR009057Homeodomain-like
SuperFamilySSF466897.83E-22274IPR009057Homeodomain-like
PROSITE profilePS5129424.8921771IPR017930Myb domain
SMARTSM007172.3E-142169IPR001005SANT/Myb domain
PfamPF002492.5E-142266IPR001005SANT/Myb domain
CDDcd001671.91E-102667No hitNo description
Gene3DG3DSA:1.10.10.606.3E-202967IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
LNRTGKSCRL RWVNYLRPGL KRGHITPQEE GIIIELHALW GNKWSTIARY LPGRTDNEIK  60
NYWRTHFKKK EKASKQGKKK IQRQRNQQQQ NCTMAKKLSP KAEEAIMQKS DEKNDNEYQD  120
AVTFMNYHQN MDPIVDLAPV TTSSDISYAW TDTIPMDGLW GGLWNIDVDD KCKVAIQNQP  180
STANYSYSTD YAVNLYNGGF IF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-1737040107B-MYB
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016504544.11e-124PREDICTED: myb-related protein 305-like
TrEMBLA0A1S4CU731e-123A0A1S4CU73_TOBAC; myb-related protein 305-like
STRINGXP_009802593.11e-122(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12242154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30210.12e-47myb domain protein 121